Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZYA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZYA entry

There are 2 chains in PDB entry 8ZYA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 324	CYS 514
D	SER 19	LEU 724

There are 37 helices in PDB entry 8ZYA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	339	343	Right-handed 310
Helix 2	AA2	A	397	401	Right-handed 310
Helix 3	AA3	A	407	413	Right-handed alpha
Helix 4	AA4	D	24	53	Right-handed alpha
Helix 5	AA5	D	55	60	Right-handed alpha
Helix 6	AA6	D	61	81	Right-handed alpha
Helix 7	AA7	D	90	100	Right-handed alpha
Helix 8	AA8	D	109	129	Right-handed alpha
Helix 9	AA9	D	147	155	Right-handed alpha
Helix 10	AB1	D	157	168	Right-handed alpha
Helix 11	AB2	D	172	193	Right-handed alpha
Helix 12	AB3	D	198	204	Right-handed alpha
Helix 13	AB4	D	218	233	Right-handed alpha
Helix 14	AB5	D	233	248	Right-handed alpha
Helix 15	AB6	D	275	279	Right-handed 310
Helix 16	AB7	D	293	300	Right-handed alpha
Helix 17	AB8	D	303	318	Right-handed alpha
Helix 18	AB9	D	326	331	Right-handed alpha
Helix 19	AC1	D	365	385	Right-handed alpha
Helix 20	AC2	D	386	388	Right-handed 310
Helix 21	AC3	D	389	393	Right-handed 310
Helix 22	AC4	D	399	409	Right-handed alpha
Helix 23	AC5	D	416	421	Right-handed alpha
Helix 24	AC6	D	431	446	Right-handed alpha
Helix 25	AC7	D	449	465	Right-handed alpha
Helix 26	AC8	D	469	471	Right-handed 310
Helix 27	AC9	D	472	484	Right-handed alpha
Helix 28	AD1	D	499	502	Right-handed 310
Helix 29	AD2	D	503	508	Right-handed alpha
Helix 30	AD3	D	512	533	Right-handed alpha
Helix 31	AD4	D	538	542	Right-handed 310
Helix 32	AD5	D	547	559	Right-handed alpha
Helix 33	AD6	D	565	575	Right-handed alpha
Helix 34	AD7	D	581	588	Right-handed alpha
Helix 35	AD8	D	588	599	Right-handed alpha
Helix 36	AD9	D	636	657	Right-handed alpha
Helix 37	AE1	D	695	706	Right-handed alpha

There are 7 sheets in PDB entry 8ZYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	371	first strand
Strand 2	A	422	428	anti-parallel
Strand 3	A	497	504	anti-parallel
Strand 4	A	386	393	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	443	first strand
Strand 2	A	481	483	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	463	first strand
Strand 2	A	477	478	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	133	first strand
Strand 2	D	141	142	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	487	488	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	352	first strand
Strand 2	D	355	359	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	618	621	first strand
Strand 2	D	679	684	anti-parallel
Strand 3	D	669	672	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZYA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZYA