Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZYB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZYB entry

There are 5 chains in PDB entry 8ZYB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	SER 1	PRO 282
A	THR 3	PRO 282
B	THR 3	PRO 282
C	ALA 5	PRO 282
D	ALA 5	HIS 203

There are102 helices in PDB entry 8ZYB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	14	26	Right-handed alpha
Helix 2	AA2	E	35	55	Right-handed alpha
Helix 3	AA3	E	73	78	Right-handed alpha
Helix 4	AA4	E	78	84	Right-handed alpha
Helix 5	AA5	E	88	104	Right-handed alpha
Helix 6	AA6	E	127	131	Right-handed 310
Helix 7	AA7	E	132	137	Right-handed alpha
Helix 8	AA8	E	138	142	Right-handed 310
Helix 9	AA9	E	168	172	Right-handed 310
Helix 10	AB1	E	180	184	Right-handed 310
Helix 11	AB2	E	237	244	Right-handed alpha
Helix 12	AB3	E	245	252	Right-handed alpha
Helix 13	AB4	E	273	278	Right-handed alpha
Helix 14	AB5	A	14	26	Right-handed alpha
Helix 15	AB6	A	35	52	Right-handed alpha
Helix 16	AB7	A	73	78	Right-handed alpha
Helix 17	AB8	A	78	84	Right-handed alpha
Helix 18	AB9	A	88	104	Right-handed alpha
Helix 19	AC1	A	127	131	Right-handed 310
Helix 20	AC2	A	132	137	Right-handed alpha
Helix 21	AC3	A	138	142	Right-handed 310
Helix 22	AC4	A	168	172	Right-handed 310
Helix 23	AC5	A	180	184	Right-handed 310
Helix 24	AC6	A	237	244	Right-handed alpha
Helix 25	AC7	A	245	252	Right-handed alpha
Helix 26	AC8	A	273	278	Right-handed alpha
Helix 27	AC9	B	14	26	Right-handed alpha
Helix 28	AD1	B	35	52	Right-handed alpha
Helix 29	AD2	B	73	78	Right-handed alpha
Helix 30	AD3	B	78	84	Right-handed alpha
Helix 31	AD4	B	88	104	Right-handed alpha
Helix 32	AD5	B	127	131	Right-handed 310
Helix 33	AD6	B	132	137	Right-handed alpha
Helix 34	AD7	B	138	142	Right-handed 310
Helix 35	AD8	B	168	172	Right-handed 310
Helix 36	AD9	B	237	243	Right-handed alpha
Helix 37	AE1	B	245	252	Right-handed alpha
Helix 38	AE2	B	273	278	Right-handed alpha
Helix 39	AE3	C	14	26	Right-handed alpha
Helix 40	AE4	C	35	54	Right-handed alpha
Helix 41	AE5	C	73	78	Right-handed alpha
Helix 42	AE6	C	78	84	Right-handed alpha
Helix 43	AE7	C	88	104	Right-handed alpha
Helix 44	AE8	C	127	131	Right-handed 310
Helix 45	AE9	C	132	137	Right-handed alpha
Helix 46	AF1	C	138	142	Right-handed 310
Helix 47	AF2	C	168	172	Right-handed 310
Helix 48	AF3	C	180	184	Right-handed 310
Helix 49	AF4	C	237	243	Right-handed alpha
Helix 50	AF5	C	245	252	Right-handed alpha
Helix 51	AF6	C	273	278	Right-handed alpha
Helix 52	AF7	D	14	26	Right-handed alpha
Helix 53	AF8	D	35	52	Right-handed alpha
Helix 54	AF9	D	73	78	Right-handed alpha
Helix 55	AG1	D	78	84	Right-handed alpha
Helix 56	AG2	D	88	100	Right-handed alpha
Helix 57	AG3	D	127	131	Right-handed 310
Helix 58	AG4	D	132	137	Right-handed alpha
Helix 59	AG5	D	138	142	Right-handed 310
Helix 60	AG6	D	168	172	Right-handed 310
Helix 61	AG7	D	180	184	Right-handed 310
Helix 62	AG8	D	237	244	Right-handed alpha
Helix 63	AG9	D	245	252	Right-handed alpha
Helix 64	AH1	D	273	278	Right-handed alpha
Helix 65	AH2	F	14	26	Right-handed alpha
Helix 66	AH3	F	35	52	Right-handed alpha
Helix 67	AH4	F	73	78	Right-handed alpha
Helix 68	AH5	F	78	84	Right-handed alpha
Helix 69	AH6	F	88	104	Right-handed alpha
Helix 70	AH7	F	127	131	Right-handed 310
Helix 71	AH8	F	132	137	Right-handed alpha
Helix 72	AH9	F	138	142	Right-handed 310
Helix 73	AI1	F	168	172	Right-handed 310
Helix 74	AI2	F	180	184	Right-handed 310
Helix 75	AI3	F	237	244	Right-handed alpha
Helix 76	AI4	F	245	252	Right-handed alpha
Helix 77	AI5	F	273	278	Right-handed alpha
Helix 78	AI6	G	14	26	Right-handed alpha
Helix 79	AI7	G	35	52	Right-handed alpha
Helix 80	AI8	G	73	78	Right-handed alpha
Helix 81	AI9	G	78	84	Right-handed alpha
Helix 82	AJ1	G	88	104	Right-handed alpha
Helix 83	AJ2	G	127	131	Right-handed 310
Helix 84	AJ3	G	132	137	Right-handed alpha
Helix 85	AJ4	G	138	142	Right-handed 310
Helix 86	AJ5	G	168	172	Right-handed 310
Helix 87	AJ6	G	180	184	Right-handed 310
Helix 88	AJ7	G	237	243	Right-handed alpha
Helix 89	AJ8	G	245	252	Right-handed alpha
Helix 90	AJ9	G	273	278	Right-handed alpha
Helix 91	AK1	H	14	25	Right-handed alpha
Helix 92	AK2	H	35	52	Right-handed alpha
Helix 93	AK3	H	73	78	Right-handed alpha
Helix 94	AK4	H	78	84	Right-handed alpha
Helix 95	AK5	H	88	104	Right-handed alpha
Helix 96	AK6	H	127	131	Right-handed 310
Helix 97	AK7	H	132	137	Right-handed alpha
Helix 98	AK8	H	138	142	Right-handed 310
Helix 99	AK9	H	168	172	Right-handed 310
Helix 100	AL1	H	237	243	Right-handed alpha
Helix 101	AL2	H	245	252	Right-handed alpha
Helix 102	AL3	H	273	278	Right-handed alpha

There are 16 sheets in PDB entry 8ZYB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	9	first strand
Strand 2	E	27	30	parallel
Strand 3	E	194	198	anti-parallel
Strand 4	E	147	152	anti-parallel
Strand 5	E	215	224	anti-parallel
Strand 6	E	106	116	anti-parallel
Strand 7	E	68	71	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	185	186	first strand
Strand 2	E	164	165	anti-parallel
Strand 3	E	203	204	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	A	27	30	parallel
Strand 3	A	194	198	anti-parallel
Strand 4	A	147	152	anti-parallel
Strand 5	A	215	224	anti-parallel
Strand 6	A	106	116	anti-parallel
Strand 7	A	69	71	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	186	first strand
Strand 2	A	164	165	anti-parallel
Strand 3	A	203	204	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	27	30	parallel
Strand 3	B	194	198	anti-parallel
Strand 4	B	147	152	anti-parallel
Strand 5	B	215	224	anti-parallel
Strand 6	B	106	116	anti-parallel
Strand 7	B	69	71	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	186	first strand
Strand 2	B	164	165	anti-parallel
Strand 3	B	203	204	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	194	198	anti-parallel
Strand 3	C	147	152	anti-parallel
Strand 4	C	215	224	anti-parallel
Strand 5	C	106	116	anti-parallel
Strand 6	C	68	71	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	186	first strand
Strand 2	C	164	165	anti-parallel
Strand 3	C	203	204	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	30	first strand
Strand 2	D	194	198	anti-parallel
Strand 3	D	147	152	anti-parallel
Strand 4	D	215	224	anti-parallel
Strand 5	D	106	116	anti-parallel
Strand 6	D	68	71	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	186	first strand
Strand 2	D	164	165	anti-parallel
Strand 3	D	203	204	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	30	first strand
Strand 2	F	194	198	anti-parallel
Strand 3	F	147	152	anti-parallel
Strand 4	F	215	224	anti-parallel
Strand 5	F	106	116	anti-parallel
Strand 6	F	68	71	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	185	186	first strand
Strand 2	F	164	165	anti-parallel
Strand 3	F	203	204	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	30	first strand
Strand 2	G	194	198	anti-parallel
Strand 3	G	147	152	anti-parallel
Strand 4	G	215	224	anti-parallel
Strand 5	G	106	116	anti-parallel
Strand 6	G	68	71	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	185	186	first strand
Strand 2	G	164	165	anti-parallel
Strand 3	G	203	204	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	29	first strand
Strand 2	H	195	198	anti-parallel
Strand 3	H	147	152	anti-parallel
Strand 4	H	217	224	anti-parallel
Strand 5	H	106	115	anti-parallel
Strand 6	H	69	71	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	185	186	first strand
Strand 2	H	164	165	anti-parallel
Strand 3	H	203	204	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZYB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZYB