Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZYC entry

There are 7 chains in PDB entry 8ZYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2VAL 41
A
 CYS 43ASP 314
B
 LYS 127ILE 227
C
 A 1 U 36
C
 A 38 U 72
E
 SER 2VAL 41
E
 CYS 43LEU 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8ZYC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed 310
Helix 2
AA2
A
42 56Right-handed alpha
Helix 3
AA3
A
71 84Right-handed alpha
Helix 4
AA4
A
97 107Right-handed alpha
Helix 5
AA5
A
119 134Right-handed alpha
Helix 6
AA6
A
147 156Right-handed alpha
Helix 7
AA7
A
156 165Right-handed alpha
Helix 8
AA8
A
179 191Right-handed alpha
Helix 9
AA9
A
209 217Right-handed alpha
Helix 10
AB1
A
251 267Right-handed alpha
Helix 11
AB2
A
271 286Right-handed alpha
Helix 12
AB3
A
287 291Right-handed 310
Helix 13
AB4
B
133 151Right-handed alpha
Helix 14
AB5
B
152 164Right-handed alpha
Helix 15
AB6
B
177 196Right-handed alpha
Helix 16
AB7
B
201 223Right-handed alpha
Helix 17
AB8
E
7 12Right-handed 310
Helix 18
AB9
E
41 56Right-handed alpha
Helix 19
AC1
E
71 85Right-handed alpha
Helix 20
AC2
E
97 107Right-handed alpha
Helix 21
AC3
E
119 134Right-handed alpha
Helix 22
AC4
E
147 156Right-handed alpha
Helix 23
AC5
E
156 166Right-handed alpha
Helix 24
AC6
E
180 191Right-handed alpha
Helix 25
AC7
E
209 216Right-handed alpha
Helix 26
AC8
E
240 244Right-handed 310
Helix 27
AC9
E
251 267Right-handed alpha
Helix 28
AD1
E
271 285Right-handed alpha
Helix 29
AD2
E
287 291Right-handed 310
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There are 4 sheets in PDB entry 8ZYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
295 299parallel
Strand 4
A
171 175parallel
Strand 5
A
199 205parallel
Strand 6
A
246 250parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 114first strand
Strand 2
A
88 93parallel
Strand 3
A
64 68parallel
Strand 4
A
138 140parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
17 19first strand
Strand 2
E
28 32anti-parallel
Strand 3
E
295 299parallel
Strand 4
E
171 175parallel
Strand 5
E
199 205parallel
Strand 6
E
246 250parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
64 67first strand
Strand 2
E
87 93parallel
Strand 3
E
110 114parallel
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