Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZYE entry

There are 2 chains in PDB entry 8ZYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 45GLN 286
B
 PRO 4LEU 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8ZYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 74Right-handed alpha
Helix 2
AA2
A
75 78Right-handed 310
Helix 3
AA3
A
81 94Right-handed alpha
Helix 4
AA4
A
97 101Right-handed 310
Helix 5
AA5
A
102 105Right-handed 310
Helix 6
AA6
A
106 113Right-handed alpha
Helix 7
AA7
A
128 139Right-handed alpha
Helix 8
AA8
A
144 147Right-handed 310
Helix 9
AA9
A
148 155Right-handed alpha
Helix 10
AB1
A
183 199Right-handed alpha
Helix 11
AB2
A
220 225Right-handed alpha
Helix 12
AB3
A
226 230Right-handed 310
Helix 13
AB4
A
252 255Right-handed 310
Helix 14
AB5
A
256 269Right-handed alpha
Helix 15
AB6
B
90 94Right-handed 310
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There are 8 sheets in PDB entry 8ZYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
172 173anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 126first strand
Strand 2
A
202 209parallel
Strand 3
A
235 243parallel
Strand 4
A
272 278parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
21 26anti-parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
71 76anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
50 55anti-parallel
Strand 3
B
37 43anti-parallel
Strand 4
B
95 102anti-parallel
Strand 5
B
108 111anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
50 55anti-parallel
Strand 3
B
37 43anti-parallel
Strand 4
B
95 102anti-parallel
Strand 5
B
115 117anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 147first strand
Strand 2
B
240 244parallel
Strand 3
B
221 228anti-parallel
Strand 4
B
170 174anti-parallel
Strand 5
B
181 184anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 147first strand
Strand 2
B
240 244parallel
Strand 3
B
221 228anti-parallel
Strand 4
B
233 236anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 158first strand
Strand 2
B
206 211anti-parallel
Strand 3
B
198 203anti-parallel
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