Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZYJ entry

There are 3 chains in PDB entry 8ZYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 47SER 383
A
 LYS 385TYR 1029
B
 LYS 13SER 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 8ZYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 64Right-handed alpha
Helix 2
AA2
A
72 84Right-handed alpha
Helix 3
AA3
A
95 105Right-handed alpha
Helix 4
AA4
A
106 130Right-handed alpha
Helix 5
AA5
A
135 170Right-handed alpha
Helix 6
AA6
A
189 193Right-handed 310
Helix 7
AA7
A
223 228Right-handed alpha
Helix 8
AA8
A
269 272Right-handed 310
Helix 9
AA9
A
273 284Right-handed alpha
Helix 10
AB1
A
290 321Right-handed alpha
Helix 11
AB2
A
324 339Right-handed alpha
Helix 12
AB3
A
341 361Right-handed alpha
Helix 13
AB4
A
370 378Right-handed alpha
Helix 14
AB5
A
423 436Right-handed alpha
Helix 15
AB6
A
449 453Right-handed 310
Helix 16
AB7
A
458 472Right-handed alpha
Helix 17
AB8
A
474 482Right-handed alpha
Helix 18
AB9
A
517 522Right-handed alpha
Helix 19
AC1
A
539 542Right-handed 310
Helix 20
AC2
A
543 553Right-handed alpha
Helix 21
AC3
A
568 572Right-handed 310
Helix 22
AC4
A
604 615Right-handed alpha
Helix 23
AC5
A
626 637Right-handed alpha
Helix 24
AC6
A
646 655Right-handed alpha
Helix 25
AC7
A
673 677Right-handed alpha
Helix 26
AC8
A
680 691Right-handed alpha
Helix 27
AC9
A
700 714Right-handed alpha
Helix 28
AD1
A
724 726Right-handed 310
Helix 29
AD2
A
727 734Right-handed alpha
Helix 30
AD3
A
745 752Right-handed alpha
Helix 31
AD4
A
761 788Right-handed alpha
Helix 32
AD5
A
789 803Right-handed alpha
Helix 33
AD6
A
809 818Right-handed alpha
Helix 34
AD7
A
821 828Right-handed alpha
Helix 35
AD8
A
829 831Right-handed 310
Helix 36
AD9
A
836 840Right-handed 310
Helix 37
AE1
A
852 860Right-handed alpha
Helix 38
AE2
A
862 882Right-handed alpha
Helix 39
AE3
A
885 890Right-handed 310
Helix 40
AE4
A
892 897Right-handed alpha
Helix 41
AE5
A
913 943Right-handed alpha
Helix 42
AE6
A
949 954Right-handed alpha
Helix 43
AE7
A
957 977Right-handed alpha
Helix 44
AE8
A
979 984Right-handed alpha
Helix 45
AE9
A
990 995Right-handed alpha
Helix 46
AF1
A
997 1018Right-handed alpha
Helix 47
AF2
A
1021 1028Right-handed alpha
Helix 48
AF3
B
28 60Right-handed alpha
Helix 49
AF4
B
98 109Right-handed alpha
Helix 50
AF5
B
110 117Right-handed 310
Helix 51
AF6
B
152 160Right-handed 310
Helix 52
AF7
B
217 224Right-handed alpha
Helix 53
AF8
B
241 243Right-handed 310
Helix 54
AF9
B
246 251Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 8ZYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
184 186anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 202first strand
Strand 2
A
256 268anti-parallel
Strand 3
A
210 222anti-parallel
Strand 4
A
233 235anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 202first strand
Strand 2
A
256 268anti-parallel
Strand 3
A
210 222anti-parallel
Strand 4
A
250 251anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
754 756anti-parallel
Strand 3
A
736 740parallel
Strand 4
A
718 722parallel
Strand 5
A
380 383parallel
Strand 6
A
618 622parallel
Strand 7
A
693 697parallel
Strand 8
A
668 672parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 407first strand
Strand 2
A
395 401anti-parallel
Strand 3
A
590 598anti-parallel
Strand 4
A
558 564anti-parallel
Strand 5
A
510 516anti-parallel
Strand 6
A
496 502anti-parallel
Strand 7
A
484 486anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 407first strand
Strand 2
A
395 401anti-parallel
Strand 3
A
590 598anti-parallel
Strand 4
A
527 528parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
904 905first strand
Strand 2
A
911 912anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
B
175 180anti-parallel
Strand 3
B
259 263anti-parallel
Strand 4
B
227 230anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
294 301parallel
Strand 3
B
272 278anti-parallel
Strand 4
B
208 215anti-parallel
Strand 5
B
237 239anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
148 149parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il