Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZYM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZYM entry

There are 9 chains in PDB entry 8ZYM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 26	TYR 480
B	GLN 26	TYR 480
C	GLN 26	TYR 480
D	ASP 1	LYS 112
E	ASP 1	LYS 112
F	ASP 1	LYS 112
G	GLN 1	SER 121
H	GLN 1	SER 121
I	GLN 1	SER 121

There are 39 helices in PDB entry 8ZYM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	100	Right-handed alpha
Helix 2	AA2	A	109	121	Right-handed alpha
Helix 3	AA3	A	123	135	Right-handed alpha
Helix 4	AA4	A	155	163	Right-handed alpha
Helix 5	AA5	A	163	170	Right-handed alpha
Helix 6	AA6	A	177	202	Right-handed alpha
Helix 7	AA7	A	214	225	Right-handed alpha
Helix 8	AA8	A	228	238	Right-handed alpha
Helix 9	AA9	A	238	246	Right-handed alpha
Helix 10	AB1	A	339	346	Right-handed alpha
Helix 11	AB2	A	452	480	Right-handed alpha
Helix 12	AB3	B	73	100	Right-handed alpha
Helix 13	AB4	B	109	121	Right-handed alpha
Helix 14	AB5	B	123	132	Right-handed alpha
Helix 15	AB6	B	156	163	Right-handed alpha
Helix 16	AB7	B	163	170	Right-handed alpha
Helix 17	AB8	B	177	202	Right-handed alpha
Helix 18	AB9	B	214	224	Right-handed alpha
Helix 19	AC1	B	228	238	Right-handed alpha
Helix 20	AC2	B	238	245	Right-handed alpha
Helix 21	AC3	B	339	346	Right-handed alpha
Helix 22	AC4	B	434	439	Right-handed 310
Helix 23	AC5	B	457	479	Right-handed alpha
Helix 24	AC6	C	73	100	Right-handed alpha
Helix 25	AC7	C	107	121	Right-handed alpha
Helix 26	AC8	C	123	132	Right-handed alpha
Helix 27	AC9	C	155	163	Right-handed alpha
Helix 28	AD1	C	163	170	Right-handed alpha
Helix 29	AD2	C	177	202	Right-handed alpha
Helix 30	AD3	C	214	225	Right-handed alpha
Helix 31	AD4	C	228	238	Right-handed alpha
Helix 32	AD5	C	238	246	Right-handed alpha
Helix 33	AD6	C	339	346	Right-handed alpha
Helix 34	AD7	C	434	439	Right-handed 310
Helix 35	AD8	C	453	478	Right-handed alpha
Helix 36	AD9	G	86	90	Right-handed 310
Helix 37	AE1	H	28	32	Right-handed 310
Helix 38	AE2	H	86	90	Right-handed 310
Helix 39	AE3	I	86	90	Right-handed 310

There are 37 sheets in PDB entry 8ZYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	272	279	anti-parallel
Strand 3	A	301	306	anti-parallel
Strand 4	A	309	313	anti-parallel
Strand 5	A	334	336	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	272	279	anti-parallel
Strand 3	A	38	40	anti-parallel
Strand 4	A	29	33	anti-parallel
Strand 5	A	426	430	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	141	first strand
Strand 2	A	147	154	anti-parallel
Strand 3	A	51	59	parallel
Strand 4	A	257	266	anti-parallel
Strand 5	A	248	254	anti-parallel
Strand 6	A	204	205	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	297	first strand
Strand 2	A	356	359	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	321	first strand
Strand 2	A	326	327	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	369	first strand
Strand 2	A	372	377	anti-parallel
Strand 3	A	399	403	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	395	first strand
Strand 2	A	383	387	anti-parallel
Strand 3	A	410	413	anti-parallel
Strand 4	A	416	419	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	322	first strand
Strand 2	B	325	329	anti-parallel
Strand 3	B	38	49	parallel
Strand 4	B	272	279	anti-parallel
Strand 5	B	301	306	anti-parallel
Strand 6	B	309	313	anti-parallel
Strand 7	B	334	336	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	322	first strand
Strand 2	B	325	329	anti-parallel
Strand 3	B	38	49	parallel
Strand 4	B	30	33	anti-parallel
Strand 5	B	427	430	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	155	first strand
Strand 2	B	53	60	parallel
Strand 3	B	257	264	anti-parallel
Strand 4	B	248	254	anti-parallel
Strand 5	B	204	205	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	147	149	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	297	first strand
Strand 2	B	355	359	anti-parallel
Strand 3	B	451	452	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	368	first strand
Strand 2	B	373	377	anti-parallel
Strand 3	B	399	403	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	395	first strand
Strand 2	B	383	387	anti-parallel
Strand 3	B	410	413	anti-parallel
Strand 4	B	416	419	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	327	first strand
Strand 2	C	44	47	parallel
Strand 3	C	272	279	anti-parallel
Strand 4	C	301	306	anti-parallel
Strand 5	C	309	313	anti-parallel
Strand 6	C	334	336	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	327	first strand
Strand 2	C	44	47	parallel
Strand 3	C	272	279	anti-parallel
Strand 4	C	38	40	anti-parallel
Strand 5	C	30	33	anti-parallel
Strand 6	C	427	430	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	141	first strand
Strand 2	C	147	154	anti-parallel
Strand 3	C	51	59	parallel
Strand 4	C	257	266	anti-parallel
Strand 5	C	248	254	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	297	first strand
Strand 2	C	355	359	anti-parallel
Strand 3	C	448	452	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	369	first strand
Strand 2	C	372	377	anti-parallel
Strand 3	C	399	403	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	395	first strand
Strand 2	C	383	387	anti-parallel
Strand 3	C	410	413	anti-parallel
Strand 4	C	416	419	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	76	81	anti-parallel
Strand 4	D	71	73	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	110	parallel
Strand 3	D	91	96	anti-parallel
Strand 4	D	39	44	anti-parallel
Strand 5	D	51	55	anti-parallel
Strand 6	D	59	60	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	110	parallel
Strand 3	D	91	96	anti-parallel
Strand 4	D	102	103	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	76	81	anti-parallel
Strand 4	E	71	73	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	107	110	parallel
Strand 3	E	91	96	anti-parallel
Strand 4	E	39	44	anti-parallel
Strand 5	E	51	55	anti-parallel
Strand 6	E	59	60	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	107	110	parallel
Strand 3	E	91	96	anti-parallel
Strand 4	E	102	103	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	36	37	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	76	81	anti-parallel
Strand 4	F	71	73	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	110	parallel
Strand 3	F	91	96	anti-parallel
Strand 4	F	39	44	anti-parallel
Strand 5	F	51	55	anti-parallel
Strand 6	F	59	60	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	110	parallel
Strand 3	F	91	96	anti-parallel
Strand 4	F	102	103	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	36	37	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	16	25	anti-parallel
Strand 3	G	77	85	anti-parallel
Strand 4	G	68	72	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	51	first strand
Strand 2	G	34	39	anti-parallel
Strand 3	G	91	94	anti-parallel
Strand 4	G	115	117	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	68	72	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	51	first strand
Strand 2	H	34	39	anti-parallel
Strand 3	H	91	94	anti-parallel
Strand 4	H	115	117	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	68	72	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	58	first strand
Strand 2	I	46	51	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	91	94	anti-parallel
Strand 5	I	115	117	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZYM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZYM