Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZYR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZYR entry

There are 4 chains in PDB entry 8ZYR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	VAL 493
B	GLN 1	ALA 484
C	GLN 1	CYS 483
D	GLN 1	ARG 492

There are 21 helices in PDB entry 8ZYR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	65	Right-handed 310
Helix 2	AA2	A	88	92	Right-handed 310
Helix 3	AA3	A	217	221	Right-handed 310
Helix 4	AA4	A	222	260	Right-handed alpha
Helix 5	AA5	A	262	292	Right-handed alpha
Helix 6	AA6	A	429	431	Right-handed 310
Helix 7	AA7	B	74	77	Right-handed 310
Helix 8	AA8	B	88	92	Right-handed 310
Helix 9	AA9	B	209	215	Right-handed alpha
Helix 10	AB1	B	226	292	Right-handed alpha
Helix 11	AB2	B	299	308	Right-handed alpha
Helix 12	AB3	C	61	65	Right-handed 310
Helix 13	AB4	C	74	78	Right-handed 310
Helix 14	AB5	C	88	92	Right-handed 310
Helix 15	AB6	C	220	226	Right-handed alpha
Helix 16	AB7	C	226	293	Right-handed alpha
Helix 17	AB8	C	299	308	Right-handed alpha
Helix 18	AB9	C	316	320	Right-handed 310
Helix 19	AC1	D	88	92	Right-handed 310
Helix 20	AC2	D	221	253	Right-handed alpha
Helix 21	AC3	D	254	293	Right-handed alpha

There are 28 sheets in PDB entry 8ZYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	104	113	parallel
Strand 3	A	94	101	anti-parallel
Strand 4	A	35	39	anti-parallel
Strand 5	A	48	51	anti-parallel
Strand 6	A	54	56	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	23	first strand
Strand 2	A	80	84	anti-parallel
Strand 3	A	68	70	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	137	138	anti-parallel
Strand 3	A	175	178	anti-parallel
Strand 4	A	162	165	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	132	134	anti-parallel
Strand 3	A	180	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	A	147	151	anti-parallel
Strand 3	A	188	194	anti-parallel
Strand 4	A	201	207	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	299	first strand
Strand 2	D	297	298	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	315	first strand
Strand 2	A	321	324	anti-parallel
Strand 3	A	469	471	anti-parallel
Strand 4	A	357	363	anti-parallel
Strand 5	A	421	427	anti-parallel
Strand 6	A	434	437	anti-parallel
Strand 7	A	442	446	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	348	first strand
Strand 2	A	456	462	anti-parallel
Strand 3	A	370	376	anti-parallel
Strand 4	A	393	399	anti-parallel
Strand 5	A	402	403	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	23	26	anti-parallel
Strand 3	B	79	84	anti-parallel
Strand 4	B	68	71	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	104	115	parallel
Strand 3	B	93	101	anti-parallel
Strand 4	B	35	39	anti-parallel
Strand 5	B	46	51	anti-parallel
Strand 6	B	54	56	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	167	first strand
Strand 2	B	173	181	anti-parallel
Strand 3	B	132	138	anti-parallel
Strand 4	B	122	129	anti-parallel
Strand 5	C	201	208	parallel
Strand 6	C	189	194	anti-parallel
Strand 7	C	147	151	anti-parallel
Strand 8	C	157	158	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	147	151	anti-parallel
Strand 3	B	189	195	anti-parallel
Strand 4	B	200	208	anti-parallel
Strand 5	C	122	129	parallel
Strand 6	C	132	142	anti-parallel
Strand 7	C	173	182	anti-parallel
Strand 8	C	161	162	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	147	151	anti-parallel
Strand 3	B	189	195	anti-parallel
Strand 4	B	200	208	anti-parallel
Strand 5	C	122	129	parallel
Strand 6	C	132	142	anti-parallel
Strand 7	C	173	182	anti-parallel
Strand 8	C	166	167	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	310	first strand
Strand 2	B	365	371	parallel
Strand 3	B	430	436	anti-parallel
Strand 4	B	441	446	anti-parallel
Strand 5	B	452	456	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	326	first strand
Strand 2	B	333	335	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	466	471	anti-parallel
Strand 3	B	378	383	anti-parallel
Strand 4	B	401	407	anti-parallel
Strand 5	B	411	414	anti-parallel
Strand 6	B	420	421	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	18	26	anti-parallel
Strand 3	C	80	85	anti-parallel
Strand 4	C	68	71	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	104	115	parallel
Strand 3	C	93	101	anti-parallel
Strand 4	C	35	40	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	54	55	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	326	first strand
Strand 2	C	333	335	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	466	471	anti-parallel
Strand 3	C	377	384	anti-parallel
Strand 4	C	402	408	anti-parallel
Strand 5	C	412	415	anti-parallel
Strand 6	C	422	423	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	456	first strand
Strand 2	C	442	447	anti-parallel
Strand 3	C	431	437	anti-parallel
Strand 4	C	365	371	anti-parallel
Strand 5	C	481	483	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	19	26	anti-parallel
Strand 3	D	79	84	anti-parallel
Strand 4	D	68	74	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	109	114	parallel
Strand 3	D	93	100	anti-parallel
Strand 4	D	35	38	anti-parallel
Strand 5	D	48	51	anti-parallel
Strand 6	D	54	55	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	129	first strand
Strand 2	D	132	142	anti-parallel
Strand 3	D	173	178	anti-parallel
Strand 4	D	162	167	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	129	first strand
Strand 2	D	132	142	anti-parallel
Strand 3	D	180	181	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	147	151	anti-parallel
Strand 3	D	188	194	anti-parallel
Strand 4	D	201	207	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	315	first strand
Strand 2	D	321	324	anti-parallel
Strand 3	D	469	471	anti-parallel
Strand 4	D	358	363	anti-parallel
Strand 5	D	421	427	anti-parallel
Strand 6	D	432	437	anti-parallel
Strand 7	D	443	446	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	348	first strand
Strand 2	D	456	462	anti-parallel
Strand 3	D	370	376	anti-parallel
Strand 4	D	393	399	anti-parallel
Strand 5	D	402	403	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZYR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZYR