Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZYS entry

There are 10 chains in PDB entry 8ZYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11THR 131
B
 PRO 11THR 131
C
 ASN 13ARG 129
D
 HIS 10THR 131
E
 ASN 12SER 132
F
 ASN 12LEU 130
G
 A 1 C 25
H
 G 2 G 25
I
 A 1 C 25
J
 T 1 G 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8ZYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 24Right-handed alpha
Helix 2
AA2
A
42 51Right-handed alpha
Helix 3
AA3
A
76 87Right-handed alpha
Helix 4
AA4
A
120 127Right-handed 310
Helix 5
AA5
B
13 24Right-handed alpha
Helix 6
AA6
B
43 51Right-handed alpha
Helix 7
AA7
B
76 87Right-handed alpha
Helix 8
AA8
B
120 127Right-handed 310
Helix 9
AA9
C
14 24Right-handed alpha
Helix 10
AB1
C
43 51Right-handed alpha
Helix 11
AB2
C
76 87Right-handed alpha
Helix 12
AB3
C
120 127Right-handed 310
Helix 13
AB4
D
12 24Right-handed alpha
Helix 14
AB5
D
42 51Right-handed alpha
Helix 15
AB6
D
76 87Right-handed alpha
Helix 16
AB7
D
120 127Right-handed 310
Helix 17
AB8
E
13 24Right-handed alpha
Helix 18
AB9
E
42 51Right-handed alpha
Helix 19
AC1
E
76 87Right-handed alpha
Helix 20
AC2
E
120 127Right-handed 310
Helix 21
AC3
F
13 24Right-handed alpha
Helix 22
AC4
F
43 51Right-handed alpha
Helix 23
AC5
F
76 87Right-handed alpha
Helix 24
AC6
F
120 127Right-handed 310
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There are 6 sheets in PDB entry 8ZYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
39 41anti-parallel
Strand 3
A
109 112anti-parallel
Strand 4
A
90 91anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
39 42anti-parallel
Strand 3
B
108 112anti-parallel
Strand 4
B
90 91anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 32first strand
Strand 2
C
39 42anti-parallel
Strand 3
C
108 112anti-parallel
Strand 4
C
90 91anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 32first strand
Strand 2
D
39 41anti-parallel
Strand 3
D
109 112anti-parallel
Strand 4
D
90 91anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
30 32first strand
Strand 2
E
39 41anti-parallel
Strand 3
E
109 112anti-parallel
Strand 4
E
90 91anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
30 32first strand
Strand 2
F
38 42anti-parallel
Strand 3
F
108 112anti-parallel
Strand 4
F
90 91anti-parallel
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