Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZYU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZYU entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 8ZYU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 4	PRO 365
D	GLU 24	LYS 244
L	ARG 8	LEU 13
Q	ALA 20	CYS 235
R	ASN 57	LEU 382
R	ASN 405	HIS 406
R	LEU 408	LEU 408
R	ASN 411	ALA 412

There are 19 helices in PDB entry 8ZYU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	43	48	Right-handed alpha
Helix 2	AA2	B	97	108	Right-handed alpha
Helix 3	AA3	D	110	114	Right-handed 310
Helix 4	AA4	D	186	188	Right-handed 310
Helix 5	AA5	D	217	219	Right-handed 310
Helix 6	AA6	Q	100	104	Right-handed 310
Helix 7	AA7	Q	142	149	Right-handed alpha
Helix 8	AA8	Q	170	174	Right-handed 310
Helix 9	AA9	Q	204	210	Right-handed alpha
Helix 10	AB1	R	59	90	Right-handed alpha
Helix 11	AB2	R	100	127	Right-handed alpha
Helix 12	AB3	R	137	172	Right-handed alpha
Helix 13	AB4	R	172	180	Right-handed alpha
Helix 14	AB5	R	181	201	Right-handed alpha
Helix 15	AB6	R	201	206	Right-handed alpha
Helix 16	AB7	R	229	267	Right-handed alpha
Helix 17	AB8	R	300	326	Right-handed alpha
Helix 18	AB9	R	335	368	Right-handed alpha
Helix 19	AC1	R	368	382	Right-handed alpha

There are 17 sheets in PDB entry 8ZYU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	116	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	18	21	anti-parallel
Strand 4	B	6	11	anti-parallel
Strand 5	R	408	411	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	162	170	parallel
Strand 3	B	140	150	anti-parallel
Strand 4	B	51	64	anti-parallel
Strand 5	B	126	128	first strand
Strand 6	B	287	289	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	84	first strand
Strand 2	B	51	64	anti-parallel
Strand 3	B	140	150	anti-parallel
Strand 4	R	294	296	first strand
Strand 5	R	288	291	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	187	first strand
Strand 2	B	196	202	anti-parallel
Strand 3	B	213	221	anti-parallel
Strand 4	B	265	273	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	207	first strand
Strand 2	B	339	350	parallel
Strand 3	B	316	329	anti-parallel
Strand 4	B	227	241	anti-parallel
Strand 5	B	245	257	anti-parallel
Strand 6	R	95	96	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	30	first strand
Strand 2	D	41	48	anti-parallel
Strand 3	D	101	106	anti-parallel
Strand 4	D	91	96	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	137	141	parallel
Strand 3	D	115	123	anti-parallel
Strand 4	D	55	62	anti-parallel
Strand 5	D	68	74	anti-parallel
Strand 6	D	81	83	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	137	141	parallel
Strand 3	D	115	123	anti-parallel
Strand 4	D	132	133	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	154	first strand
Strand 2	D	165	175	anti-parallel
Strand 3	D	206	215	anti-parallel
Strand 4	D	194	195	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	154	first strand
Strand 2	D	165	175	anti-parallel
Strand 3	D	206	215	anti-parallel
Strand 4	D	199	200	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	184	first strand
Strand 2	D	224	230	anti-parallel
Strand 3	D	235	241	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	25	27	first strand
Strand 2	Q	40	46	anti-parallel
Strand 3	Q	91	96	anti-parallel
Strand 4	Q	83	87	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	31	33	first strand
Strand 2	Q	123	126	parallel
Strand 3	Q	106	111	anti-parallel
Strand 4	Q	54	59	anti-parallel
Strand 5	Q	66	70	anti-parallel
Strand 6	Q	74	75	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	31	33	first strand
Strand 2	Q	123	126	parallel
Strand 3	Q	106	111	anti-parallel
Strand 4	Q	118	119	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	136	139	first strand
Strand 2	Q	150	160	anti-parallel
Strand 3	Q	194	203	anti-parallel
Strand 4	Q	181	184	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	167	168	first strand
Strand 2	Q	212	217	anti-parallel
Strand 3	Q	226	231	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	207	210	first strand
Strand 2	R	223	226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZYU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZYU