Analysis of interatomic Contacts of Structural Units in PDB entry:
9ARE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ARE entry

There are 3 chains in PDB entry 9ARE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	LYS 841
B	SER 34	TRP 844
C	LYS 25	LEU 221

There are108 helices in PDB entry 9ARE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	50	Right-handed alpha
Helix 2	AA2	A	70	86	Right-handed alpha
Helix 3	AA3	A	103	112	Right-handed alpha
Helix 4	AA4	A	145	158	Right-handed alpha
Helix 5	AA5	A	170	187	Right-handed alpha
Helix 6	AA6	A	204	212	Right-handed alpha
Helix 7	AA7	A	224	238	Right-handed alpha
Helix 8	AA8	A	250	255	Right-handed alpha
Helix 9	AA9	A	256	261	Right-handed 310
Helix 10	AB1	A	277	296	Right-handed alpha
Helix 11	AB2	A	318	327	Right-handed alpha
Helix 12	AB3	A	458	471	Right-handed alpha
Helix 13	AB4	A	499	507	Right-handed alpha
Helix 14	AB5	A	520	527	Right-handed alpha
Helix 15	AB6	A	559	583	Right-handed alpha
Helix 16	AB7	A	603	616	Right-handed alpha
Helix 17	AB8	A	626	655	Right-handed alpha
Helix 18	AB9	A	669	674	Right-handed alpha
Helix 19	AC1	A	687	694	Right-handed alpha
Helix 20	AC2	A	696	698	Right-handed 310
Helix 21	AC3	A	699	707	Right-handed alpha
Helix 22	AC4	A	713	723	Right-handed alpha
Helix 23	AC5	A	733	743	Right-handed alpha
Helix 24	AC6	A	766	780	Right-handed alpha
Helix 25	AC7	A	783	793	Right-handed alpha
Helix 26	AC8	A	812	822	Right-handed alpha
Helix 27	AC9	A	822	840	Right-handed alpha
Helix 28	AD1	B	46	56	Right-handed alpha
Helix 29	AD2	B	77	92	Right-handed alpha
Helix 30	AD3	B	105	120	Right-handed alpha
Helix 31	AD4	B	149	164	Right-handed alpha
Helix 32	AD5	B	176	192	Right-handed alpha
Helix 33	AD6	B	212	221	Right-handed alpha
Helix 34	AD7	B	233	248	Right-handed alpha
Helix 35	AD8	B	288	311	Right-handed alpha
Helix 36	AD9	B	325	330	Right-handed 310
Helix 37	AE1	B	332	339	Right-handed alpha
Helix 38	AE2	B	459	473	Right-handed alpha
Helix 39	AE3	B	496	503	Right-handed alpha
Helix 40	AE4	B	516	523	Right-handed alpha
Helix 41	AE5	B	548	552	Right-handed 310
Helix 42	AE6	B	555	581	Right-handed alpha
Helix 43	AE7	B	601	615	Right-handed alpha
Helix 44	AE8	B	625	646	Right-handed alpha
Helix 45	AE9	B	649	654	Right-handed alpha
Helix 46	AF1	B	668	673	Right-handed alpha
Helix 47	AF2	B	689	699	Right-handed alpha
Helix 48	AF3	B	699	707	Right-handed alpha
Helix 49	AF4	B	713	724	Right-handed alpha
Helix 50	AF5	B	733	742	Right-handed alpha
Helix 51	AF6	B	752	754	Right-handed 310
Helix 52	AF7	B	771	787	Right-handed alpha
Helix 53	AF8	B	787	797	Right-handed alpha
Helix 54	AF9	B	814	844	Right-handed alpha
Helix 55	AG1	C	35	50	Right-handed alpha
Helix 56	AG2	C	70	86	Right-handed alpha
Helix 57	AG3	C	103	112	Right-handed alpha
Helix 58	AG4	C	145	158	Right-handed alpha
Helix 59	AG5	C	170	187	Right-handed alpha
Helix 60	AG6	C	204	212	Right-handed alpha
Helix 61	AG7	C	224	238	Right-handed alpha
Helix 62	AG8	C	250	255	Right-handed alpha
Helix 63	AG9	C	256	261	Right-handed 310
Helix 64	AH1	C	277	296	Right-handed alpha
Helix 65	AH2	C	318	327	Right-handed alpha
Helix 66	AH3	C	458	471	Right-handed alpha
Helix 67	AH4	C	499	507	Right-handed alpha
Helix 68	AH5	C	520	527	Right-handed alpha
Helix 69	AH6	C	559	583	Right-handed alpha
Helix 70	AH7	C	603	616	Right-handed alpha
Helix 71	AH8	C	626	655	Right-handed alpha
Helix 72	AH9	C	669	674	Right-handed alpha
Helix 73	AI1	C	687	695	Right-handed alpha
Helix 74	AI2	C	696	698	Right-handed 310
Helix 75	AI3	C	699	707	Right-handed alpha
Helix 76	AI4	C	713	723	Right-handed alpha
Helix 77	AI5	C	733	743	Right-handed alpha
Helix 78	AI6	C	766	780	Right-handed alpha
Helix 79	AI7	C	783	793	Right-handed alpha
Helix 80	AI8	C	812	822	Right-handed alpha
Helix 81	AI9	C	822	840	Right-handed alpha
Helix 82	AJ1	D	46	56	Right-handed alpha
Helix 83	AJ2	D	77	92	Right-handed alpha
Helix 84	AJ3	D	105	120	Right-handed alpha
Helix 85	AJ4	D	149	164	Right-handed alpha
Helix 86	AJ5	D	176	192	Right-handed alpha
Helix 87	AJ6	D	212	221	Right-handed alpha
Helix 88	AJ7	D	233	248	Right-handed alpha
Helix 89	AJ8	D	288	311	Right-handed alpha
Helix 90	AJ9	D	325	330	Right-handed 310
Helix 91	AK1	D	332	339	Right-handed alpha
Helix 92	AK2	D	459	473	Right-handed alpha
Helix 93	AK3	D	496	503	Right-handed alpha
Helix 94	AK4	D	516	523	Right-handed alpha
Helix 95	AK5	D	548	552	Right-handed 310
Helix 96	AK6	D	555	581	Right-handed alpha
Helix 97	AK7	D	601	615	Right-handed alpha
Helix 98	AK8	D	625	646	Right-handed alpha
Helix 99	AK9	D	649	654	Right-handed alpha
Helix 100	AL1	D	668	673	Right-handed alpha
Helix 101	AL2	D	689	699	Right-handed alpha
Helix 102	AL3	D	699	707	Right-handed alpha
Helix 103	AL4	D	713	724	Right-handed alpha
Helix 104	AL5	D	733	742	Right-handed alpha
Helix 105	AL6	D	752	754	Right-handed 310
Helix 106	AL7	D	771	787	Right-handed alpha
Helix 107	AL8	D	787	797	Right-handed alpha
Helix 108	AL9	D	814	844	Right-handed alpha

There are 28 sheets in PDB entry 9ARE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	65	first strand
Strand 2	A	29	32	parallel
Strand 3	A	90	92	parallel
Strand 4	A	118	120	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	197	first strand
Strand 2	A	163	168	parallel
Strand 3	A	218	222	parallel
Strand 4	A	246	248	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	351	357	anti-parallel
Strand 3	A	360	367	anti-parallel
Strand 4	A	372	374	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	478	first strand
Strand 2	A	397	402	parallel
Strand 3	A	512	513	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	453	457	anti-parallel
Strand 3	A	434	436	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	529	first strand
Strand 2	A	761	762	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	682	first strand
Strand 2	A	728	732	parallel
Strand 3	A	538	543	anti-parallel
Strand 4	A	746	753	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	73	first strand
Strand 2	B	36	42	parallel
Strand 3	B	94	101	parallel
Strand 4	B	123	128	parallel
Strand 5	B	143	145	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	203	first strand
Strand 2	B	168	173	parallel
Strand 3	B	227	231	parallel
Strand 4	B	255	258	parallel
Strand 5	B	278	282	parallel
Strand 6	B	361	367	anti-parallel
Strand 7	B	373	380	anti-parallel
Strand 8	B	383	386	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	480	first strand
Strand 2	B	406	410	parallel
Strand 3	B	508	509	parallel
Strand 4	B	765	766	anti-parallel
Strand 5	B	524	525	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	453	458	anti-parallel
Strand 3	B	434	438	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	490	first strand
Strand 2	B	493	494	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	732	first strand
Strand 2	B	531	539	anti-parallel
Strand 3	B	748	750	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	732	first strand
Strand 2	B	531	539	anti-parallel
Strand 3	B	757	761	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	65	first strand
Strand 2	C	29	32	parallel
Strand 3	C	90	92	parallel
Strand 4	C	118	120	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	197	first strand
Strand 2	C	163	168	parallel
Strand 3	C	218	222	parallel
Strand 4	C	246	248	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	351	357	anti-parallel
Strand 3	C	360	367	anti-parallel
Strand 4	C	372	374	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	478	first strand
Strand 2	C	397	402	parallel
Strand 3	C	512	513	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	453	457	anti-parallel
Strand 3	C	434	436	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	528	529	first strand
Strand 2	C	761	762	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	728	732	parallel
Strand 3	C	538	543	anti-parallel
Strand 4	C	746	753	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	73	first strand
Strand 2	D	36	42	parallel
Strand 3	D	94	101	parallel
Strand 4	D	123	128	parallel
Strand 5	D	143	145	parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	203	first strand
Strand 2	D	168	173	parallel
Strand 3	D	227	231	parallel
Strand 4	D	255	258	parallel
Strand 5	D	278	282	parallel
Strand 6	D	361	367	anti-parallel
Strand 7	D	373	380	anti-parallel
Strand 8	D	383	386	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	480	first strand
Strand 2	D	406	410	parallel
Strand 3	D	508	509	parallel
Strand 4	D	765	766	anti-parallel
Strand 5	D	524	525	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	420	first strand
Strand 2	D	453	458	anti-parallel
Strand 3	D	434	438	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	490	first strand
Strand 2	D	493	494	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	729	732	first strand
Strand 2	D	531	539	anti-parallel
Strand 3	D	748	750	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	729	732	first strand
Strand 2	D	531	539	anti-parallel
Strand 3	D	757	761	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ARE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ARE