Analysis of interatomic Contacts of Structural Units in PDB entry:
9ARF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ARF entry

There are 3 chains in PDB entry 9ARF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	LYS 841
B	SER 34	GLN 845
C	LYS 25	ALA 62

There are110 helices in PDB entry 9ARF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	51	Right-handed alpha
Helix 2	AA2	A	71	86	Right-handed alpha
Helix 3	AA3	A	104	113	Right-handed alpha
Helix 4	AA4	A	126	130	Right-handed 310
Helix 5	AA5	A	143	147	Right-handed 310
Helix 6	AA6	A	148	158	Right-handed alpha
Helix 7	AA7	A	170	186	Right-handed alpha
Helix 8	AA8	A	204	212	Right-handed alpha
Helix 9	AA9	A	224	236	Right-handed alpha
Helix 10	AB1	A	255	259	Right-handed 310
Helix 11	AB2	A	277	296	Right-handed alpha
Helix 12	AB3	A	320	327	Right-handed alpha
Helix 13	AB4	A	459	470	Right-handed alpha
Helix 14	AB5	A	499	506	Right-handed alpha
Helix 15	AB6	A	522	525	Right-handed 310
Helix 16	AB7	A	559	583	Right-handed alpha
Helix 17	AB8	A	604	612	Right-handed alpha
Helix 18	AB9	A	628	655	Right-handed alpha
Helix 19	AC1	A	669	674	Right-handed alpha
Helix 20	AC2	A	689	694	Right-handed alpha
Helix 21	AC3	A	699	708	Right-handed alpha
Helix 22	AC4	A	713	723	Right-handed alpha
Helix 23	AC5	A	733	743	Right-handed alpha
Helix 24	AC6	A	766	770	Right-handed 310
Helix 25	AC7	A	772	777	Right-handed alpha
Helix 26	AC8	A	778	781	Right-handed 310
Helix 27	AC9	A	783	793	Right-handed alpha
Helix 28	AD1	A	810	812	Right-handed 310
Helix 29	AD2	A	813	841	Right-handed alpha
Helix 30	AD3	B	46	55	Right-handed alpha
Helix 31	AD4	B	77	92	Right-handed alpha
Helix 32	AD5	B	106	119	Right-handed alpha
Helix 33	AD6	B	128	132	Right-handed 310
Helix 34	AD7	B	149	164	Right-handed alpha
Helix 35	AD8	B	178	190	Right-handed alpha
Helix 36	AD9	B	212	221	Right-handed alpha
Helix 37	AE1	B	233	248	Right-handed alpha
Helix 38	AE2	B	259	264	Right-handed alpha
Helix 39	AE3	B	291	310	Right-handed alpha
Helix 40	AE4	B	326	330	Right-handed 310
Helix 41	AE5	B	332	339	Right-handed alpha
Helix 42	AE6	B	459	472	Right-handed alpha
Helix 43	AE7	B	495	503	Right-handed alpha
Helix 44	AE8	B	555	577	Right-handed alpha
Helix 45	AE9	B	601	612	Right-handed alpha
Helix 46	AF1	B	624	656	Right-handed alpha
Helix 47	AF2	B	668	673	Right-handed alpha
Helix 48	AF3	B	674	677	Right-handed 310
Helix 49	AF4	B	689	699	Right-handed alpha
Helix 50	AF5	B	700	708	Right-handed alpha
Helix 51	AF6	B	713	723	Right-handed alpha
Helix 52	AF7	B	733	742	Right-handed alpha
Helix 53	AF8	B	772	787	Right-handed alpha
Helix 54	AF9	B	787	797	Right-handed alpha
Helix 55	AG1	B	818	845	Right-handed alpha
Helix 56	AG2	C	35	51	Right-handed alpha
Helix 57	AG3	C	71	86	Right-handed alpha
Helix 58	AG4	C	104	113	Right-handed alpha
Helix 59	AG5	C	126	130	Right-handed 310
Helix 60	AG6	C	143	147	Right-handed 310
Helix 61	AG7	C	148	158	Right-handed alpha
Helix 62	AG8	C	170	186	Right-handed alpha
Helix 63	AG9	C	204	212	Right-handed alpha
Helix 64	AH1	C	224	236	Right-handed alpha
Helix 65	AH2	C	255	259	Right-handed 310
Helix 66	AH3	C	277	296	Right-handed alpha
Helix 67	AH4	C	320	327	Right-handed alpha
Helix 68	AH5	C	459	470	Right-handed alpha
Helix 69	AH6	C	499	506	Right-handed alpha
Helix 70	AH7	C	522	525	Right-handed 310
Helix 71	AH8	C	559	583	Right-handed alpha
Helix 72	AH9	C	604	612	Right-handed alpha
Helix 73	AI1	C	628	655	Right-handed alpha
Helix 74	AI2	C	669	674	Right-handed alpha
Helix 75	AI3	C	689	694	Right-handed alpha
Helix 76	AI4	C	699	708	Right-handed alpha
Helix 77	AI5	C	713	723	Right-handed alpha
Helix 78	AI6	C	733	743	Right-handed alpha
Helix 79	AI7	C	766	770	Right-handed 310
Helix 80	AI8	C	772	777	Right-handed alpha
Helix 81	AI9	C	778	781	Right-handed 310
Helix 82	AJ1	C	783	793	Right-handed alpha
Helix 83	AJ2	C	810	812	Right-handed 310
Helix 84	AJ3	C	813	841	Right-handed alpha
Helix 85	AJ4	D	46	55	Right-handed alpha
Helix 86	AJ5	D	77	92	Right-handed alpha
Helix 87	AJ6	D	106	119	Right-handed alpha
Helix 88	AJ7	D	128	132	Right-handed 310
Helix 89	AJ8	D	149	164	Right-handed alpha
Helix 90	AJ9	D	178	190	Right-handed alpha
Helix 91	AK1	D	212	221	Right-handed alpha
Helix 92	AK2	D	233	248	Right-handed alpha
Helix 93	AK3	D	259	264	Right-handed alpha
Helix 94	AK4	D	291	310	Right-handed alpha
Helix 95	AK5	D	326	330	Right-handed 310
Helix 96	AK6	D	332	339	Right-handed alpha
Helix 97	AK7	D	459	472	Right-handed alpha
Helix 98	AK8	D	495	503	Right-handed alpha
Helix 99	AK9	D	555	577	Right-handed alpha
Helix 100	AL1	D	601	612	Right-handed alpha
Helix 101	AL2	D	624	656	Right-handed alpha
Helix 102	AL3	D	668	673	Right-handed alpha
Helix 103	AL4	D	674	677	Right-handed 310
Helix 104	AL5	D	689	699	Right-handed alpha
Helix 105	AL6	D	700	708	Right-handed alpha
Helix 106	AL7	D	713	723	Right-handed alpha
Helix 107	AL8	D	733	742	Right-handed alpha
Helix 108	AL9	D	772	787	Right-handed alpha
Helix 109	AM1	D	787	797	Right-handed alpha
Helix 110	AM2	D	818	845	Right-handed alpha

There are 28 sheets in PDB entry 9ARF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	29	32	parallel
Strand 3	A	90	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	138	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	197	first strand
Strand 2	A	163	168	parallel
Strand 3	A	218	222	parallel
Strand 4	A	246	248	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	350	357	anti-parallel
Strand 3	A	360	368	anti-parallel
Strand 4	A	372	374	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	478	first strand
Strand 2	A	400	402	parallel
Strand 3	A	512	518	parallel
Strand 4	A	758	763	anti-parallel
Strand 5	A	527	529	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	413	first strand
Strand 2	A	450	456	anti-parallel
Strand 3	A	434	439	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	489	first strand
Strand 2	A	496	498	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	682	first strand
Strand 2	A	728	732	parallel
Strand 3	A	538	542	anti-parallel
Strand 4	A	747	748	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	73	first strand
Strand 2	B	36	42	parallel
Strand 3	B	94	100	parallel
Strand 4	B	123	127	parallel
Strand 5	B	143	145	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	168	173	parallel
Strand 3	B	227	231	parallel
Strand 4	B	255	258	parallel
Strand 5	B	278	282	parallel
Strand 6	B	362	366	anti-parallel
Strand 7	B	374	380	anti-parallel
Strand 8	B	383	385	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	409	first strand
Strand 2	B	508	509	parallel
Strand 3	B	765	766	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	455	458	anti-parallel
Strand 3	B	434	436	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	490	first strand
Strand 2	B	493	494	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	532	first strand
Strand 2	B	760	761	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	684	first strand
Strand 2	B	728	732	parallel
Strand 3	B	534	539	anti-parallel
Strand 4	B	748	750	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	63	first strand
Strand 2	C	29	32	parallel
Strand 3	C	90	92	parallel
Strand 4	C	118	120	parallel
Strand 5	C	138	139	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	197	first strand
Strand 2	C	163	168	parallel
Strand 3	C	218	222	parallel
Strand 4	C	246	248	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	271	first strand
Strand 2	C	350	357	anti-parallel
Strand 3	C	360	368	anti-parallel
Strand 4	C	372	374	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	476	478	first strand
Strand 2	C	400	402	parallel
Strand 3	C	512	518	parallel
Strand 4	C	758	763	anti-parallel
Strand 5	C	527	529	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	413	first strand
Strand 2	C	450	456	anti-parallel
Strand 3	C	434	439	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	489	first strand
Strand 2	C	496	498	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	728	732	parallel
Strand 3	C	538	542	anti-parallel
Strand 4	C	747	748	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	73	first strand
Strand 2	D	36	42	parallel
Strand 3	D	94	100	parallel
Strand 4	D	123	127	parallel
Strand 5	D	143	145	parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	199	first strand
Strand 2	D	168	173	parallel
Strand 3	D	227	231	parallel
Strand 4	D	255	258	parallel
Strand 5	D	278	282	parallel
Strand 6	D	362	366	anti-parallel
Strand 7	D	374	380	anti-parallel
Strand 8	D	383	385	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	408	409	first strand
Strand 2	D	508	509	parallel
Strand 3	D	765	766	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	420	first strand
Strand 2	D	455	458	anti-parallel
Strand 3	D	434	436	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	490	first strand
Strand 2	D	493	494	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	531	532	first strand
Strand 2	D	760	761	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	683	684	first strand
Strand 2	D	728	732	parallel
Strand 3	D	534	539	anti-parallel
Strand 4	D	748	750	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ARF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ARF