Analysis of interatomic Contacts of Structural Units in PDB entry:
9ARJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ARJ entry

There are 3 chains in PDB entry 9ARJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LEU 168	PRO 745
A	PRO 2	LYS 1252
B	MET 1	ILE 1163

There are 80 helices in PDB entry 9ARJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	181	192	Right-handed alpha
Helix 2	AA2	C	314	330	Right-handed alpha
Helix 3	AA3	C	349	356	Right-handed 310
Helix 4	AA4	C	407	414	Right-handed alpha
Helix 5	AA5	C	422	438	Right-handed alpha
Helix 6	AA6	C	467	471	Right-handed 310
Helix 7	AA7	C	544	551	Right-handed alpha
Helix 8	AA8	C	551	567	Right-handed alpha
Helix 9	AA9	C	576	587	Right-handed alpha
Helix 10	AB1	C	601	610	Right-handed alpha
Helix 11	AB2	C	613	633	Right-handed alpha
Helix 12	AB3	C	642	650	Right-handed alpha
Helix 13	AB4	C	655	674	Right-handed alpha
Helix 14	AB5	C	682	697	Right-handed alpha
Helix 15	AB6	C	705	713	Right-handed alpha
Helix 16	AB7	A	51	56	Right-handed 310
Helix 17	AB8	A	76	97	Right-handed alpha
Helix 18	AB9	A	97	109	Right-handed alpha
Helix 19	AC1	A	205	222	Right-handed alpha
Helix 20	AC2	A	224	229	Right-handed alpha
Helix 21	AC3	A	249	256	Right-handed alpha
Helix 22	AC4	A	258	262	Right-handed 310
Helix 23	AC5	A	264	287	Right-handed alpha
Helix 24	AC6	A	296	307	Right-handed alpha
Helix 25	AC7	A	320	334	Right-handed alpha
Helix 26	AC8	A	335	343	Right-handed alpha
Helix 27	AC9	A	377	388	Right-handed 310
Helix 28	AD1	A	392	394	Right-handed 310
Helix 29	AD2	A	432	434	Right-handed 310
Helix 30	AD3	A	467	474	Right-handed alpha
Helix 31	AD4	A	518	527	Right-handed alpha
Helix 32	AD5	A	540	547	Right-handed alpha
Helix 33	AD6	A	556	565	Right-handed alpha
Helix 34	AD7	A	568	570	Right-handed 310
Helix 35	AD8	A	571	588	Right-handed alpha
Helix 36	AD9	A	603	605	Right-handed 310
Helix 37	AE1	A	606	611	Right-handed alpha
Helix 38	AE2	A	614	620	Right-handed alpha
Helix 39	AE3	A	620	629	Right-handed alpha
Helix 40	AE4	A	630	633	Right-handed 310
Helix 41	AE5	A	661	726	Right-handed alpha
Helix 42	AE6	A	743	781	Right-handed alpha
Helix 43	AE7	A	781	801	Right-handed alpha
Helix 44	AE8	A	808	821	Right-handed alpha
Helix 45	AE9	A	835	850	Right-handed alpha
Helix 46	AF1	A	1055	1066	Right-handed alpha
Helix 47	AF2	A	1223	1228	Right-handed alpha
Helix 48	AF3	B	71	92	Right-handed alpha
Helix 49	AF4	B	92	105	Right-handed alpha
Helix 50	AF5	B	154	160	Right-handed alpha
Helix 51	AF6	B	184	202	Right-handed alpha
Helix 52	AF7	B	229	236	Right-handed alpha
Helix 53	AF8	B	236	244	Right-handed alpha
Helix 54	AF9	B	253	273	Right-handed alpha
Helix 55	AG1	B	280	291	Right-handed alpha
Helix 56	AG2	B	294	301	Right-handed alpha
Helix 57	AG3	B	302	311	Right-handed alpha
Helix 58	AG4	B	321	326	Right-handed alpha
Helix 59	AG5	B	346	351	Right-handed alpha
Helix 60	AG6	B	356	361	Right-handed 310
Helix 61	AG7	B	397	400	Right-handed 310
Helix 62	AG8	B	422	428	Right-handed alpha
Helix 63	AG9	B	465	473	Right-handed alpha
Helix 64	AH1	B	485	492	Right-handed alpha
Helix 65	AH2	B	501	511	Right-handed alpha
Helix 66	AH3	B	519	539	Right-handed alpha
Helix 67	AH4	B	556	562	Right-handed alpha
Helix 68	AH5	B	569	578	Right-handed alpha
Helix 69	AH6	B	579	583	Right-handed 310
Helix 70	AH7	B	600	604	Right-handed 310
Helix 71	AH8	B	607	641	Right-handed alpha
Helix 72	AH9	B	641	677	Right-handed alpha
Helix 73	AI1	B	681	725	Right-handed alpha
Helix 74	AI2	B	725	752	Right-handed alpha
Helix 75	AI3	B	756	768	Right-handed alpha
Helix 76	AI4	B	778	784	Right-handed alpha
Helix 77	AI5	B	788	798	Right-handed alpha
Helix 78	AI6	B	857	861	Right-handed 310
Helix 79	AI7	B	990	1003	Right-handed alpha
Helix 80	AI8	B	1103	1107	Right-handed 310

There are 40 sheets in PDB entry 9ARJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	365	first strand
Strand 2	C	386	392	anti-parallel
Strand 3	C	175	179	anti-parallel
Strand 4	C	417	421	anti-parallel
Strand 5	C	735	743	anti-parallel
Strand 6	C	722	725	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	204	first strand
Strand 2	C	207	214	anti-parallel
Strand 3	C	237	242	anti-parallel
Strand 4	C	245	248	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	C	229	234	anti-parallel
Strand 3	C	254	259	anti-parallel
Strand 4	C	298	303	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	267	first strand
Strand 2	C	280	286	anti-parallel
Strand 3	C	340	343	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	370	first strand
Strand 2	C	378	380	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	446	449	first strand
Strand 2	C	454	457	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	483	487	first strand
Strand 2	C	490	503	anti-parallel
Strand 3	C	506	523	anti-parallel
Strand 4	C	526	533	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	483	487	first strand
Strand 2	C	490	503	anti-parallel
Strand 3	C	506	523	anti-parallel
Strand 4	C	538	543	anti-parallel
Strand 5	C	594	599	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	144	first strand
Strand 2	A	132	135	anti-parallel
Strand 3	A	18	22	anti-parallel
Strand 4	A	30	36	anti-parallel
Strand 5	A	39	42	anti-parallel
Strand 6	A	148	151	parallel
Strand 7	A	182	185	parallel
Strand 8	A	161	164	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	505	506	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	404	405	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	190	195	anti-parallel
Strand 3	A	356	360	anti-parallel
Strand 4	A	396	397	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	247	248	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	311	first strand
Strand 2	A	317	319	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	430	first strand
Strand 2	A	408	416	anti-parallel
Strand 3	A	510	513	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	538	first strand
Strand 2	A	550	552	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	592	first strand
Strand 2	A	601	602	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	862	864	first strand
Strand 2	A	851	857	anti-parallel
Strand 3	A	1041	1050	anti-parallel
Strand 4	A	888	891	anti-parallel
Strand 5	A	879	880	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	862	864	first strand
Strand 2	A	851	857	anti-parallel
Strand 3	A	1041	1050	anti-parallel
Strand 4	A	915	922	anti-parallel
Strand 5	A	990	997	anti-parallel
Strand 6	A	1002	1007	anti-parallel
Strand 7	A	1010	1016	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	871	875	first strand
Strand 2	A	897	901	anti-parallel
Strand 3	A	1025	1031	anti-parallel
Strand 4	A	937	943	anti-parallel
Strand 5	A	949	955	anti-parallel
Strand 6	A	958	964	anti-parallel
Strand 7	A	970	976	anti-parallel

Back to list of sheets
Back to top of page

There are 13 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1147	1153	first strand
Strand 2	A	1159	1164	anti-parallel
Strand 3	A	1172	1177	anti-parallel
Strand 4	A	1218	1222	anti-parallel
Strand 5	A	1208	1215	anti-parallel
Strand 6	A	1196	1203	anti-parallel
Strand 7	A	1147	1153	first strand
Strand 8	A	1126	1131	anti-parallel
Strand 9	A	1086	1090	anti-parallel
Strand 10	A	1240	1243	anti-parallel
Strand 11	A	1196	1203	anti-parallel
Strand 12	A	1186	1193	anti-parallel
Strand 13	A	1196	1203	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1099	1101	first strand
Strand 2	A	1105	1107	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	123	125	anti-parallel
Strand 3	B	18	22	anti-parallel
Strand 4	B	29	36	anti-parallel
Strand 5	B	39	41	anti-parallel
Strand 6	B	136	139	parallel
Strand 7	B	166	169	parallel
Strand 8	B	149	152	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	113	first strand
Strand 2	B	116	117	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	182	first strand
Strand 2	B	174	178	anti-parallel
Strand 3	B	330	332	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	215	first strand
Strand 2	B	224	228	anti-parallel
Strand 3	B	391	393	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	343	344	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	385	first strand
Strand 2	B	368	373	anti-parallel
Strand 3	B	457	461	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	403	first strand
Strand 2	B	593	594	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	483	first strand
Strand 2	B	497	498	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	546	first strand
Strand 2	B	549	553	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	814	818	first strand
Strand 2	B	801	809	anti-parallel
Strand 3	B	977	985	anti-parallel
Strand 4	B	841	845	anti-parallel
Strand 5	B	833	836	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	814	818	first strand
Strand 2	B	801	809	anti-parallel
Strand 3	B	977	985	anti-parallel
Strand 4	B	867	875	anti-parallel
Strand 5	B	929	936	anti-parallel
Strand 6	B	941	946	anti-parallel
Strand 7	B	949	955	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	825	827	first strand
Strand 2	B	852	855	anti-parallel
Strand 3	B	967	970	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	883	890	first strand
Strand 2	B	893	900	anti-parallel
Strand 3	B	903	909	anti-parallel
Strand 4	B	915	920	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1022	1025	first strand
Strand 2	B	1158	1161	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1034	1038	first strand
Strand 2	B	1041	1045	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1059	1062	first strand
Strand 2	B	1075	1082	anti-parallel
Strand 3	B	1086	1091	anti-parallel
Strand 4	B	1098	1101	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1059	1062	first strand
Strand 2	B	1075	1082	anti-parallel
Strand 3	B	1110	1114	anti-parallel
Strand 4	B	1122	1126	anti-parallel
Strand 5	B	1129	1130	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1132	1137	first strand
Strand 2	B	1140	1144	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ARJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ARJ