Analysis of interatomic Contacts of Structural Units in PDB entry:
9ARL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ARL entry

There are 3 chains in PDB entry 9ARL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 1295
B	MET 1	LYS 1161
C	GLY 168	LEU 741

There are 85 helices in PDB entry 9ARL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	57	Right-handed 310
Helix 2	AA2	A	80	101	Right-handed alpha
Helix 3	AA3	A	101	114	Right-handed alpha
Helix 4	AA4	A	130	132	Right-handed 310
Helix 5	AA5	A	199	203	Right-handed 310
Helix 6	AA6	A	216	233	Right-handed alpha
Helix 7	AA7	A	259	267	Right-handed alpha
Helix 8	AA8	A	275	299	Right-handed alpha
Helix 9	AA9	A	309	322	Right-handed alpha
Helix 10	AB1	A	334	347	Right-handed alpha
Helix 11	AB2	A	350	359	Right-handed alpha
Helix 12	AB3	A	398	405	Right-handed 310
Helix 13	AB4	A	409	413	Right-handed 310
Helix 14	AB5	A	460	462	Right-handed 310
Helix 15	AB6	A	467	471	Right-handed 310
Helix 16	AB7	A	495	506	Right-handed alpha
Helix 17	AB8	A	549	556	Right-handed alpha
Helix 18	AB9	A	571	578	Right-handed alpha
Helix 19	AC1	A	587	596	Right-handed alpha
Helix 20	AC2	A	602	618	Right-handed alpha
Helix 21	AC3	A	636	642	Right-handed alpha
Helix 22	AC4	A	648	659	Right-handed alpha
Helix 23	AC5	A	660	664	Right-handed 310
Helix 24	AC6	A	687	721	Right-handed alpha
Helix 25	AC7	A	721	754	Right-handed alpha
Helix 26	AC8	A	755	762	Right-handed alpha
Helix 27	AC9	A	765	800	Right-handed alpha
Helix 28	AD1	A	800	826	Right-handed alpha
Helix 29	AD2	A	833	847	Right-handed alpha
Helix 30	AD3	A	852	856	Right-handed 310
Helix 31	AD4	A	861	876	Right-handed alpha
Helix 32	AD5	A	954	958	Right-handed 310
Helix 33	AD6	A	1080	1092	Right-handed alpha
Helix 34	AD7	A	1210	1214	Right-handed 310
Helix 35	AD8	A	1265	1270	Right-handed alpha
Helix 36	AD9	A	1276	1280	Right-handed 310
Helix 37	AE1	B	54	58	Right-handed 310
Helix 38	AE2	B	71	92	Right-handed alpha
Helix 39	AE3	B	92	105	Right-handed alpha
Helix 40	AE4	B	154	160	Right-handed alpha
Helix 41	AE5	B	184	201	Right-handed alpha
Helix 42	AE6	B	229	236	Right-handed alpha
Helix 43	AE7	B	238	243	Right-handed 310
Helix 44	AE8	B	253	272	Right-handed alpha
Helix 45	AE9	B	280	292	Right-handed alpha
Helix 46	AF1	B	294	301	Right-handed alpha
Helix 47	AF2	B	302	311	Right-handed alpha
Helix 48	AF3	B	321	326	Right-handed alpha
Helix 49	AF4	B	357	362	Right-handed 310
Helix 50	AF5	B	424	430	Right-handed alpha
Helix 51	AF6	B	435	439	Right-handed 310
Helix 52	AF7	B	467	475	Right-handed alpha
Helix 53	AF8	B	487	494	Right-handed alpha
Helix 54	AF9	B	504	514	Right-handed alpha
Helix 55	AG1	B	522	542	Right-handed alpha
Helix 56	AG2	B	557	563	Right-handed 310
Helix 57	AG3	B	572	581	Right-handed alpha
Helix 58	AG4	B	582	586	Right-handed 310
Helix 59	AG5	B	603	609	Right-handed 310
Helix 60	AG6	B	610	680	Right-handed alpha
Helix 61	AG7	B	684	729	Right-handed alpha
Helix 62	AG8	B	729	755	Right-handed alpha
Helix 63	AG9	B	759	770	Right-handed alpha
Helix 64	AH1	B	781	788	Right-handed alpha
Helix 65	AH2	B	791	801	Right-handed alpha
Helix 66	AH3	B	860	864	Right-handed 310
Helix 67	AH4	B	993	1006	Right-handed alpha
Helix 68	AH5	B	1152	1156	Right-handed 310
Helix 69	AH6	C	183	194	Right-handed alpha
Helix 70	AH7	C	313	331	Right-handed alpha
Helix 71	AH8	C	350	356	Right-handed 310
Helix 72	AH9	C	402	409	Right-handed alpha
Helix 73	AI1	C	418	424	Right-handed alpha
Helix 74	AI2	C	425	433	Right-handed alpha
Helix 75	AI3	C	437	439	Right-handed 310
Helix 76	AI4	C	541	547	Right-handed alpha
Helix 77	AI5	C	547	565	Right-handed alpha
Helix 78	AI6	C	571	585	Right-handed alpha
Helix 79	AI7	C	598	609	Right-handed alpha
Helix 80	AI8	C	612	634	Right-handed alpha
Helix 81	AI9	C	641	650	Right-handed alpha
Helix 82	AJ1	C	654	669	Right-handed alpha
Helix 83	AJ2	C	670	675	Right-handed alpha
Helix 84	AJ3	C	682	696	Right-handed alpha
Helix 85	AJ4	C	703	714	Right-handed alpha

There are 36 sheets in PDB entry 9ARL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	134	138	anti-parallel
Strand 3	A	19	23	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	42	45	anti-parallel
Strand 6	A	151	154	parallel
Strand 7	A	184	187	parallel
Strand 8	A	165	166	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	302	304	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	192	196	anti-parallel
Strand 3	A	372	375	anti-parallel
Strand 4	A	414	416	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	A	331	332	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	431	first strand
Strand 2	A	453	458	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	481	first strand
Strand 2	A	679	681	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	569	first strand
Strand 2	A	581	583	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	890	first strand
Strand 2	A	877	884	anti-parallel
Strand 3	A	1067	1075	anti-parallel
Strand 4	A	913	916	anti-parallel
Strand 5	A	905	906	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	890	first strand
Strand 2	A	877	884	anti-parallel
Strand 3	A	1067	1075	anti-parallel
Strand 4	A	941	948	anti-parallel
Strand 5	A	1015	1021	anti-parallel
Strand 6	A	1026	1031	anti-parallel
Strand 7	A	1034	1040	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	897	900	first strand
Strand 2	A	924	927	anti-parallel
Strand 3	A	1047	1058	anti-parallel
Strand 4	A	935	936	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	897	900	first strand
Strand 2	A	924	927	anti-parallel
Strand 3	A	1047	1058	anti-parallel
Strand 4	A	962	968	anti-parallel
Strand 5	A	973	979	anti-parallel
Strand 6	A	982	988	anti-parallel
Strand 7	A	994	1000	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1122	1125	first strand
Strand 2	A	1134	1137	anti-parallel
Strand 3	A	1258	1264	anti-parallel
Strand 4	A	1246	1255	anti-parallel
Strand 5	A	1236	1240	anti-parallel
Strand 6	A	1220	1224	anti-parallel
Strand 7	A	1178	1185	anti-parallel
Strand 8	A	1190	1194	anti-parallel
Strand 9	A	1207	1209	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1203	1205	first strand
Strand 2	A	1258	1264	anti-parallel
Strand 3	A	1246	1255	anti-parallel
Strand 4	A	1236	1240	anti-parallel
Strand 5	A	1220	1224	anti-parallel
Strand 6	A	1178	1185	anti-parallel
Strand 7	A	1159	1164	anti-parallel
Strand 8	A	1111	1115	anti-parallel
Strand 9	A	1282	1286	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1143	1145	first strand
Strand 2	A	1149	1151	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	123	125	anti-parallel
Strand 3	B	18	22	anti-parallel
Strand 4	B	29	36	anti-parallel
Strand 5	B	39	41	anti-parallel
Strand 6	B	136	139	parallel
Strand 7	B	166	169	parallel
Strand 8	B	149	152	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	113	first strand
Strand 2	B	116	118	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	182	first strand
Strand 2	B	174	178	anti-parallel
Strand 3	B	330	332	anti-parallel
Strand 4	B	354	355	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	215	first strand
Strand 2	B	224	228	anti-parallel
Strand 3	B	391	393	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	385	first strand
Strand 2	B	368	373	anti-parallel
Strand 3	B	459	463	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	485	first strand
Strand 2	B	499	501	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	545	549	first strand
Strand 2	B	552	556	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	816	821	first strand
Strand 2	B	804	813	anti-parallel
Strand 3	B	980	988	anti-parallel
Strand 4	B	844	848	anti-parallel
Strand 5	B	836	839	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	816	821	first strand
Strand 2	B	804	813	anti-parallel
Strand 3	B	980	988	anti-parallel
Strand 4	B	870	878	anti-parallel
Strand 5	B	932	939	anti-parallel
Strand 6	B	944	949	anti-parallel
Strand 7	B	952	958	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	828	831	first strand
Strand 2	B	855	858	anti-parallel
Strand 3	B	970	973	anti-parallel
Strand 4	B	886	893	anti-parallel
Strand 5	B	896	903	anti-parallel
Strand 6	B	906	912	anti-parallel
Strand 7	B	918	923	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1025	1028	first strand
Strand 2	B	1158	1161	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1044	1048	first strand
Strand 2	B	1037	1041	anti-parallel
Strand 3	B	1058	1059	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1062	1065	first strand
Strand 2	B	1078	1084	anti-parallel
Strand 3	B	1090	1094	anti-parallel
Strand 4	B	1100	1103	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1062	1065	first strand
Strand 2	B	1078	1084	anti-parallel
Strand 3	B	1112	1115	anti-parallel
Strand 4	B	1125	1128	anti-parallel
Strand 5	B	1131	1132	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1134	1135	first strand
Strand 2	B	1145	1146	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	361	first strand
Strand 2	C	381	388	anti-parallel
Strand 3	C	364	366	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	361	first strand
Strand 2	C	381	388	anti-parallel
Strand 3	C	177	182	anti-parallel
Strand 4	C	412	417	anti-parallel
Strand 5	C	734	740	anti-parallel
Strand 6	C	725	731	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	206	first strand
Strand 2	C	209	217	anti-parallel
Strand 3	C	231	244	anti-parallel
Strand 4	C	247	250	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	206	first strand
Strand 2	C	209	217	anti-parallel
Strand 3	C	231	244	anti-parallel
Strand 4	C	256	261	anti-parallel
Strand 5	C	299	304	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	267	first strand
Strand 2	C	282	288	anti-parallel
Strand 3	C	341	344	anti-parallel
Strand 4	C	715	716	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	441	442	first strand
Strand 2	C	449	452	anti-parallel
Strand 3	C	479	483	anti-parallel
Strand 4	C	486	495	anti-parallel
Strand 5	C	504	519	anti-parallel
Strand 6	C	522	529	anti-parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	462	first strand
Strand 2	C	468	473	anti-parallel
Strand 3	C	486	495	anti-parallel
Strand 4	C	504	519	anti-parallel
Strand 5	C	534	540	anti-parallel
Strand 6	C	592	597	anti-parallel
Strand 7	C	586	589	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ARL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ARL