Analysis of interatomic Contacts of Structural Units in PDB entry:
9ARV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ARV entry

There are 11 chains in PDB entry 9ARV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 141	TYR 375
B	ASP 141	THR 370
C	ASP 141	SER 368
D	ASP 141	ASP 369
E	ASP 141	SER 368
J	ILE 28	HIS 164
L	ILE 144	VAL 366
M	ASP 141	MET 367
N	ASP 141	MET 367
O	ASP 141	SER 368
P	ASP 141	TYR 375

There are 51 helices in PDB entry 9ARV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	152	159	Right-handed alpha
Helix 2	AA2	A	213	219	Right-handed alpha
Helix 3	AA3	A	259	266	Right-handed alpha
Helix 4	AA4	A	295	297	Right-handed 310
Helix 5	AA5	A	325	330	Right-handed alpha
Helix 6	AA6	B	152	160	Right-handed alpha
Helix 7	AA7	B	214	219	Right-handed alpha
Helix 8	AA8	B	259	266	Right-handed alpha
Helix 9	AA9	B	295	297	Right-handed 310
Helix 10	AB1	B	323	329	Right-handed alpha
Helix 11	AB2	B	352	357	Right-handed 310
Helix 12	AB3	C	152	160	Right-handed alpha
Helix 13	AB4	C	214	219	Right-handed alpha
Helix 14	AB5	C	259	264	Right-handed alpha
Helix 15	AB6	C	323	330	Right-handed alpha
Helix 16	AB7	D	152	160	Right-handed alpha
Helix 17	AB8	D	213	219	Right-handed alpha
Helix 18	AB9	D	259	266	Right-handed alpha
Helix 19	AC1	D	324	329	Right-handed alpha
Helix 20	AC2	D	353	357	Right-handed 310
Helix 21	AC3	E	152	160	Right-handed alpha
Helix 22	AC4	E	213	220	Right-handed alpha
Helix 23	AC5	E	259	266	Right-handed alpha
Helix 24	AC6	E	295	297	Right-handed 310
Helix 25	AC7	E	323	328	Right-handed alpha
Helix 26	AC8	E	352	356	Right-handed 310
Helix 27	AC9	J	86	91	Right-handed alpha
Helix 28	AD1	J	152	157	Right-handed alpha
Helix 29	AD2	L	151	160	Right-handed alpha
Helix 30	AD3	L	213	220	Right-handed alpha
Helix 31	AD4	L	259	266	Right-handed alpha
Helix 32	AD5	L	295	297	Right-handed 310
Helix 33	AD6	L	323	330	Right-handed alpha
Helix 34	AD7	M	152	159	Right-handed alpha
Helix 35	AD8	M	213	220	Right-handed alpha
Helix 36	AD9	M	259	265	Right-handed alpha
Helix 37	AE1	M	323	330	Right-handed alpha
Helix 38	AE2	N	152	160	Right-handed alpha
Helix 39	AE3	N	213	218	Right-handed alpha
Helix 40	AE4	N	259	264	Right-handed alpha
Helix 41	AE5	N	323	329	Right-handed alpha
Helix 42	AE6	O	153	158	Right-handed alpha
Helix 43	AE7	O	213	218	Right-handed alpha
Helix 44	AE8	O	259	266	Right-handed alpha
Helix 45	AE9	O	323	330	Right-handed alpha
Helix 46	AF1	O	352	356	Right-handed 310
Helix 47	AF2	P	152	158	Right-handed alpha
Helix 48	AF3	P	213	218	Right-handed 310
Helix 49	AF4	P	259	266	Right-handed alpha
Helix 50	AF5	P	323	330	Right-handed alpha
Helix 51	AF6	P	352	357	Right-handed alpha

There are 54 sheets in PDB entry 9ARV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	149	first strand
Strand 2	A	165	169	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	182	first strand
Strand 2	A	223	229	anti-parallel
Strand 3	A	237	240	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	269	278	anti-parallel
Strand 3	A	314	322	anti-parallel
Strand 4	A	299	301	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	269	278	anti-parallel
Strand 3	A	314	322	anti-parallel
Strand 4	A	305	306	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	284	289	anti-parallel
Strand 3	A	333	338	anti-parallel
Strand 4	A	347	351	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	368	first strand
Strand 2	B	365	368	parallel
Strand 3	C	365	367	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	149	first strand
Strand 2	B	165	169	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	182	first strand
Strand 2	B	223	225	anti-parallel
Strand 3	B	238	240	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	256	first strand
Strand 2	B	269	278	anti-parallel
Strand 3	B	314	322	anti-parallel
Strand 4	B	299	301	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	288	first strand
Strand 2	B	333	338	anti-parallel
Strand 3	B	350	351	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	149	first strand
Strand 2	C	162	169	anti-parallel
Strand 3	C	206	212	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	182	first strand
Strand 2	C	223	228	anti-parallel
Strand 3	C	236	240	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	256	first strand
Strand 2	C	269	278	anti-parallel
Strand 3	C	314	322	anti-parallel
Strand 4	C	299	306	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	288	first strand
Strand 2	C	333	338	anti-parallel
Strand 3	C	347	351	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	149	first strand
Strand 2	D	165	168	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	211	212	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	182	first strand
Strand 2	D	223	228	anti-parallel
Strand 3	D	236	240	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	199	first strand
Strand 2	D	203	205	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	256	first strand
Strand 2	D	268	278	anti-parallel
Strand 3	D	318	323	anti-parallel
Strand 4	D	299	301	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	256	first strand
Strand 2	D	268	278	anti-parallel
Strand 3	D	314	316	anti-parallel
Strand 4	D	305	306	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	292	293	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	333	338	anti-parallel
Strand 4	D	347	351	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	367	first strand
Strand 2	E	364	367	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	149	first strand
Strand 2	E	162	167	anti-parallel
Strand 3	E	207	212	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	182	first strand
Strand 2	E	224	228	anti-parallel
Strand 3	E	236	239	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	256	first strand
Strand 2	E	269	278	anti-parallel
Strand 3	E	314	322	anti-parallel
Strand 4	E	299	301	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	289	first strand
Strand 2	E	333	338	anti-parallel
Strand 3	E	346	350	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	31	33	first strand
Strand 2	J	38	40	anti-parallel
Strand 3	J	60	63	anti-parallel
Strand 4	P	363	366	parallel
Strand 5	O	365	366	parallel
Strand 6	N	365	366	parallel
Strand 7	M	365	366	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	134	138	first strand
Strand 2	J	145	149	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	149	first strand
Strand 2	L	165	169	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	178	179	first strand
Strand 2	L	227	228	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	198	199	first strand
Strand 2	L	203	204	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	223	224	first strand
Strand 2	L	239	240	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	252	256	first strand
Strand 2	L	269	278	anti-parallel
Strand 3	L	318	322	anti-parallel
Strand 4	L	299	301	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	252	256	first strand
Strand 2	L	269	278	anti-parallel
Strand 3	L	310	316	anti-parallel
Strand 4	L	305	307	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	292	293	first strand
Strand 2	L	284	289	anti-parallel
Strand 3	L	333	338	anti-parallel
Strand 4	L	347	351	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	147	149	first strand
Strand 2	M	165	167	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	178	182	first strand
Strand 2	M	224	228	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	252	256	first strand
Strand 2	M	269	278	anti-parallel
Strand 3	M	318	322	anti-parallel
Strand 4	M	299	301	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	252	256	first strand
Strand 2	M	269	278	anti-parallel
Strand 3	M	310	316	anti-parallel
Strand 4	M	305	307	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	284	289	first strand
Strand 2	M	333	338	anti-parallel
Strand 3	M	346	351	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	147	149	first strand
Strand 2	N	163	167	anti-parallel
Strand 3	N	208	211	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	180	182	first strand
Strand 2	N	224	227	anti-parallel
Strand 3	N	236	239	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	252	256	first strand
Strand 2	N	269	278	anti-parallel
Strand 3	N	318	322	anti-parallel
Strand 4	N	299	301	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	252	256	first strand
Strand 2	N	269	278	anti-parallel
Strand 3	N	314	316	anti-parallel
Strand 4	N	305	306	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	292	293	first strand
Strand 2	N	284	289	anti-parallel
Strand 3	N	333	338	anti-parallel
Strand 4	N	349	350	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	360	362	first strand
Strand 2	O	360	362	parallel
Strand 3	P	360	361	parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	252	256	first strand
Strand 2	O	269	276	anti-parallel
Strand 3	O	314	322	anti-parallel
Strand 4	O	299	301	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	252	256	first strand
Strand 2	O	269	276	anti-parallel
Strand 3	O	314	322	anti-parallel
Strand 4	O	305	306	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	284	288	first strand
Strand 2	O	333	338	anti-parallel
Strand 3	O	350	351	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	146	149	first strand
Strand 2	P	165	168	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	178	182	first strand
Strand 2	P	223	228	anti-parallel
Strand 3	P	236	240	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	252	253	first strand
Strand 2	P	275	278	anti-parallel
Strand 3	P	314	316	anti-parallel
Strand 4	P	305	306	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	269	272	first strand
Strand 2	P	318	322	anti-parallel
Strand 3	P	299	301	anti-parallel

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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	284	289	first strand
Strand 2	P	333	338	anti-parallel
Strand 3	P	347	350	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ARV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ARV