Analysis of interatomic Contacts of Structural Units in PDB entry:
9ARW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ARW entry

There are 8 chains in PDB entry 9ARW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	ILE 81	GLU 359
A	GLU 2	GLY 593
C	ALA 5	LEU 315
D	MET 1	LEU 315
E	PHE 2	LEU 315
F	ASN 4	GLU 137
G	GLN 9	ILE 136
B	MET 1	VAL 356

There are 77 helices in PDB entry 9ARW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	103	110	Right-handed alpha
Helix 2	AA2	H	141	160	Right-handed alpha
Helix 3	AA3	H	204	218	Right-handed alpha
Helix 4	AA4	H	224	229	Right-handed 310
Helix 5	AA5	H	230	235	Right-handed alpha
Helix 6	AA6	H	349	359	Right-handed alpha
Helix 7	AA7	A	14	20	Right-handed alpha
Helix 8	AA8	A	23	49	Right-handed alpha
Helix 9	AA9	A	74	104	Right-handed alpha
Helix 10	AB1	A	133	149	Right-handed alpha
Helix 11	AB2	A	187	192	Right-handed alpha
Helix 12	AB3	A	211	215	Right-handed 310
Helix 13	AB4	A	222	228	Right-handed alpha
Helix 14	AB5	A	230	234	Right-handed 310
Helix 15	AB6	A	245	250	Right-handed alpha
Helix 16	AB7	A	251	260	Right-handed alpha
Helix 17	AB8	A	265	270	Right-handed alpha
Helix 18	AB9	A	277	284	Right-handed alpha
Helix 19	AC1	A	287	291	Right-handed 310
Helix 20	AC2	A	297	313	Right-handed alpha
Helix 21	AC3	A	329	335	Right-handed alpha
Helix 22	AC4	A	343	366	Right-handed alpha
Helix 23	AC5	A	389	405	Right-handed alpha
Helix 24	AC6	A	406	410	Right-handed 310
Helix 25	AC7	A	434	450	Right-handed alpha
Helix 26	AC8	A	483	497	Right-handed alpha
Helix 27	AC9	A	502	514	Right-handed alpha
Helix 28	AD1	A	524	540	Right-handed alpha
Helix 29	AD2	A	550	563	Right-handed alpha
Helix 30	AD3	A	563	570	Right-handed alpha
Helix 31	AD4	A	574	591	Right-handed alpha
Helix 32	AD5	C	43	58	Right-handed alpha
Helix 33	AD6	C	73	81	Right-handed alpha
Helix 34	AD7	C	117	131	Right-handed alpha
Helix 35	AD8	C	175	189	Right-handed alpha
Helix 36	AD9	C	197	203	Right-handed alpha
Helix 37	AE1	C	210	221	Right-handed alpha
Helix 38	AE2	C	282	293	Right-handed alpha
Helix 39	AE3	C	302	306	Right-handed 310
Helix 40	AE4	D	43	58	Right-handed alpha
Helix 41	AE5	D	73	82	Right-handed alpha
Helix 42	AE6	D	117	131	Right-handed alpha
Helix 43	AE7	D	175	188	Right-handed alpha
Helix 44	AE8	D	196	203	Right-handed alpha
Helix 45	AE9	D	210	220	Right-handed alpha
Helix 46	AF1	D	267	275	Right-handed 310
Helix 47	AF2	D	280	291	Right-handed alpha
Helix 48	AF3	D	302	306	Right-handed 310
Helix 49	AF4	E	43	57	Right-handed alpha
Helix 50	AF5	E	73	81	Right-handed alpha
Helix 51	AF6	E	117	131	Right-handed alpha
Helix 52	AF7	E	175	189	Right-handed alpha
Helix 53	AF8	E	195	199	Right-handed 310
Helix 54	AF9	E	210	221	Right-handed alpha
Helix 55	AG1	E	271	275	Right-handed 310
Helix 56	AG2	E	280	292	Right-handed alpha
Helix 57	AG3	E	302	306	Right-handed 310
Helix 58	AG4	F	7	12	Right-handed alpha
Helix 59	AG5	F	12	30	Right-handed alpha
Helix 60	AG6	F	32	41	Right-handed alpha
Helix 61	AG7	F	42	50	Right-handed alpha
Helix 62	AG8	F	51	62	Right-handed alpha
Helix 63	AG9	F	71	88	Right-handed alpha
Helix 64	AH1	F	93	98	Right-handed alpha
Helix 65	AH2	F	101	106	Right-handed alpha
Helix 66	AH3	F	110	136	Right-handed alpha
Helix 67	AH4	G	11	28	Right-handed alpha
Helix 68	AH5	G	33	49	Right-handed alpha
Helix 69	AH6	G	55	62	Right-handed alpha
Helix 70	AH7	G	71	87	Right-handed alpha
Helix 71	AH8	G	101	107	Right-handed alpha
Helix 72	AH9	G	110	136	Right-handed alpha
Helix 73	AI1	B	35	50	Right-handed alpha
Helix 74	AI2	B	51	55	Right-handed 310
Helix 75	AI3	B	145	152	Right-handed alpha
Helix 76	AI4	B	327	335	Right-handed alpha
Helix 77	AI5	B	343	350	Right-handed alpha

There are 21 sheets in PDB entry 9ARW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	53	first strand
Strand 2	A	67	72	anti-parallel
Strand 3	A	4	11	anti-parallel
Strand 4	A	122	124	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	179	first strand
Strand 2	A	200	203	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	375	first strand
Strand 2	A	382	386	anti-parallel
Strand 3	A	319	327	anti-parallel
Strand 4	A	422	430	anti-parallel
Strand 5	A	458	464	parallel
Strand 6	A	470	476	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	207	first strand
Strand 2	C	112	115	parallel
Strand 3	C	99	106	anti-parallel
Strand 4	C	253	258	anti-parallel
Strand 5	C	6	12	anti-parallel
Strand 6	C	309	314	anti-parallel
Strand 7	C	296	298	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	63	first strand
Strand 2	C	68	70	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	168	169	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	165	166	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	42	first strand
Strand 2	D	98	106	anti-parallel
Strand 3	D	253	260	anti-parallel
Strand 4	D	112	116	first strand
Strand 5	D	206	208	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	253	260	anti-parallel
Strand 3	D	98	106	anti-parallel
Strand 4	D	4	12	first strand
Strand 5	D	309	314	anti-parallel
Strand 6	D	296	298	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	64	first strand
Strand 2	D	67	70	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	165	166	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	226	first strand
Strand 2	D	244	247	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	42	first strand
Strand 2	E	98	106	anti-parallel
Strand 3	E	253	260	anti-parallel
Strand 4	E	112	116	first strand
Strand 5	E	206	208	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	95	first strand
Strand 2	E	253	260	anti-parallel
Strand 3	E	98	106	anti-parallel
Strand 4	E	4	12	first strand
Strand 5	E	310	314	anti-parallel
Strand 6	E	296	297	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	64	first strand
Strand 2	E	67	70	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	158	first strand
Strand 2	E	165	166	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	200	203	anti-parallel
Strand 3	B	78	81	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	94	96	anti-parallel
Strand 3	B	134	135	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	111	first strand
Strand 2	B	124	126	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	282	289	anti-parallel
Strand 3	B	317	320	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	309	311	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ARW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ARW