Analysis of interatomic Contacts of Structural Units in PDB entry:
9ATK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ATK entry

There are 7 chains in PDB entry 9ATK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 29	GLN 246
D	ILE 29	GLN 246
C	THR 371	LYS 468
E	ILE 16	ARG 238
F	THR 371	LYS 468
G	ILE 29	GLN 246
H	ILE 16	ILE 233

There are 36 helices in PDB entry 9ATK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	72	Right-handed alpha
Helix 2	AA2	A	75	78	Right-handed 310
Helix 3	AA3	A	237	246	Right-handed alpha
Helix 4	AA4	D	67	72	Right-handed alpha
Helix 5	AA5	D	75	79	Right-handed 310
Helix 6	AA6	D	237	246	Right-handed alpha
Helix 7	AA7	C	400	417	Right-handed alpha
Helix 8	AA8	C	419	426	Right-handed alpha
Helix 9	AA9	C	456	458	Right-handed 310
Helix 10	AB1	E	57	61	Right-handed 310
Helix 11	AB2	E	163	171	Right-handed alpha
Helix 12	AB3	E	229	237	Right-handed alpha
Helix 13	AB4	F	400	417	Right-handed alpha
Helix 14	AB5	F	419	426	Right-handed alpha
Helix 15	AB6	F	456	458	Right-handed 310
Helix 16	AB7	G	67	72	Right-handed alpha
Helix 17	AB8	G	75	78	Right-handed 310
Helix 18	AB9	G	237	246	Right-handed alpha
Helix 19	AC1	H	57	61	Right-handed 310
Helix 20	AC2	H	163	169	Right-handed alpha
Helix 21	AC3	H	229	237	Right-handed alpha
Helix 22	AC4	I	400	417	Right-handed alpha
Helix 23	AC5	I	419	426	Right-handed alpha
Helix 24	AC6	I	456	458	Right-handed 310
Helix 25	AC7	B	57	61	Right-handed 310
Helix 26	AC8	B	163	171	Right-handed alpha
Helix 27	AC9	B	229	238	Right-handed alpha
Helix 28	AD1	J	67	72	Right-handed alpha
Helix 29	AD2	J	75	77	Right-handed 310
Helix 30	AD3	J	237	245	Right-handed alpha
Helix 31	AD4	K	57	61	Right-handed 310
Helix 32	AD5	K	163	171	Right-handed alpha
Helix 33	AD6	K	229	238	Right-handed alpha
Helix 34	AD7	L	400	417	Right-handed alpha
Helix 35	AD8	L	419	426	Right-handed alpha
Helix 36	AD9	L	456	458	Right-handed 310

There are 23 sheets in PDB entry 9ATK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	169	176	anti-parallel
Strand 3	A	149	154	anti-parallel
Strand 4	A	204	207	anti-parallel
Strand 5	A	210	219	anti-parallel
Strand 6	C	449	450	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	169	176	anti-parallel
Strand 3	A	185	188	anti-parallel
Strand 4	A	229	233	anti-parallel
Strand 5	A	210	219	anti-parallel
Strand 6	C	449	450	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	48	first strand
Strand 2	A	51	60	anti-parallel
Strand 3	A	63	66	anti-parallel
Strand 4	A	118	122	anti-parallel
Strand 5	A	96	105	anti-parallel
Strand 6	A	80	83	anti-parallel
Strand 7	A	43	48	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	169	176	anti-parallel
Strand 3	D	149	154	anti-parallel
Strand 4	D	204	207	anti-parallel
Strand 5	D	210	219	anti-parallel
Strand 6	F	449	450	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	169	176	anti-parallel
Strand 3	D	185	188	anti-parallel
Strand 4	D	229	233	anti-parallel
Strand 5	D	210	219	anti-parallel
Strand 6	F	449	450	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	80	83	anti-parallel
Strand 3	D	43	47	anti-parallel
Strand 4	D	52	60	anti-parallel
Strand 5	D	63	66	anti-parallel
Strand 6	D	118	122	anti-parallel
Strand 7	D	100	105	anti-parallel

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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	444	first strand
Strand 2	C	428	435	anti-parallel
Strand 3	C	460	468	anti-parallel
Strand 4	C	373	380	parallel
Strand 5	C	388	392	anti-parallel
Strand 6	B	40	50	anti-parallel
Strand 7	B	53	56	anti-parallel
Strand 8	B	105	109	anti-parallel
Strand 9	B	82	91	anti-parallel
Strand 10	B	64	69	anti-parallel
Strand 11	B	30	37	anti-parallel
Strand 12	B	40	50	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	384	first strand
Strand 2	B	205	214	anti-parallel
Strand 3	B	199	202	anti-parallel
Strand 4	B	136	141	anti-parallel
Strand 5	B	155	160	anti-parallel
Strand 6	B	20	21	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	384	first strand
Strand 2	B	205	214	anti-parallel
Strand 3	B	221	225	anti-parallel
Strand 4	B	179	182	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	E	155	160	anti-parallel
Strand 3	E	136	141	anti-parallel
Strand 4	E	199	202	anti-parallel
Strand 5	E	205	214	anti-parallel
Strand 6	E	221	225	anti-parallel
Strand 7	E	179	182	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	E	155	160	anti-parallel
Strand 3	E	136	141	anti-parallel
Strand 4	E	199	202	anti-parallel
Strand 5	E	205	214	anti-parallel
Strand 6	F	383	384	anti-parallel

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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	440	444	first strand
Strand 2	F	428	435	anti-parallel
Strand 3	F	460	468	anti-parallel
Strand 4	F	372	380	parallel
Strand 5	F	388	393	anti-parallel
Strand 6	E	40	50	anti-parallel
Strand 7	E	53	56	anti-parallel
Strand 8	E	105	109	anti-parallel
Strand 9	E	82	91	anti-parallel
Strand 10	E	64	69	anti-parallel
Strand 11	E	30	37	anti-parallel
Strand 12	E	40	50	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	34	first strand
Strand 2	G	169	176	anti-parallel
Strand 3	G	149	154	anti-parallel
Strand 4	G	204	207	anti-parallel
Strand 5	G	210	219	anti-parallel
Strand 6	I	449	450	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	34	first strand
Strand 2	G	169	176	anti-parallel
Strand 3	G	185	188	anti-parallel
Strand 4	G	229	233	anti-parallel
Strand 5	G	210	219	anti-parallel
Strand 6	I	449	450	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	47	first strand
Strand 2	G	52	60	anti-parallel
Strand 3	G	63	66	anti-parallel
Strand 4	G	118	122	anti-parallel
Strand 5	G	96	105	anti-parallel
Strand 6	G	80	83	anti-parallel
Strand 7	G	43	47	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	21	first strand
Strand 2	H	155	160	anti-parallel
Strand 3	H	136	141	anti-parallel
Strand 4	H	199	202	anti-parallel
Strand 5	H	205	214	anti-parallel
Strand 6	H	221	225	anti-parallel
Strand 7	H	179	182	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	21	first strand
Strand 2	H	155	160	anti-parallel
Strand 3	H	136	141	anti-parallel
Strand 4	H	199	202	anti-parallel
Strand 5	H	205	214	anti-parallel
Strand 6	I	383	384	anti-parallel

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There are 12 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	440	444	first strand
Strand 2	I	428	435	anti-parallel
Strand 3	I	460	468	anti-parallel
Strand 4	I	372	380	parallel
Strand 5	I	388	393	anti-parallel
Strand 6	H	40	50	anti-parallel
Strand 7	H	53	56	anti-parallel
Strand 8	H	105	109	anti-parallel
Strand 9	H	82	91	anti-parallel
Strand 10	H	64	69	anti-parallel
Strand 11	H	30	37	anti-parallel
Strand 12	H	40	50	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	33	34	first strand
Strand 2	J	169	176	anti-parallel
Strand 3	J	149	154	anti-parallel
Strand 4	J	204	207	anti-parallel
Strand 5	J	210	219	anti-parallel
Strand 6	L	449	450	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	33	34	first strand
Strand 2	J	169	176	anti-parallel
Strand 3	J	185	188	anti-parallel
Strand 4	J	229	233	anti-parallel
Strand 5	J	210	219	anti-parallel
Strand 6	L	449	450	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	96	98	first strand
Strand 2	J	79	83	anti-parallel
Strand 3	J	43	48	anti-parallel
Strand 4	J	51	60	anti-parallel
Strand 5	J	63	66	anti-parallel
Strand 6	J	118	122	anti-parallel
Strand 7	J	100	105	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	20	21	first strand
Strand 2	K	155	160	anti-parallel
Strand 3	K	136	141	anti-parallel
Strand 4	K	199	202	anti-parallel
Strand 5	K	205	212	anti-parallel
Strand 6	K	221	225	anti-parallel
Strand 7	K	179	182	anti-parallel

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There are 12 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	440	444	first strand
Strand 2	L	428	435	anti-parallel
Strand 3	L	460	468	anti-parallel
Strand 4	L	372	380	parallel
Strand 5	L	388	393	anti-parallel
Strand 6	K	40	50	anti-parallel
Strand 7	K	53	56	anti-parallel
Strand 8	K	105	109	anti-parallel
Strand 9	K	82	91	anti-parallel
Strand 10	K	64	69	anti-parallel
Strand 11	K	30	37	anti-parallel
Strand 12	K	40	50	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ATK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ATK