Analysis of interatomic Contacts of Structural Units in PDB entry:
9ATO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ATO entry

There are 4 chains in PDB entry 9ATO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 14	SER 1143
B	GLN 14	SER 1143
C	GLN 14	SER 1143
D	GLN 1	GLN 1

There are 75 helices in PDB entry 9ATO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	290	299	Right-handed alpha
Helix 2	AA2	A	333	337	Right-handed 310
Helix 3	AA3	A	360	366	Right-handed alpha
Helix 4	AA4	A	380	384	Right-handed 310
Helix 5	AA5	A	401	403	Right-handed 310
Helix 6	AA6	A	412	418	Right-handed alpha
Helix 7	AA7	A	434	439	Right-handed alpha
Helix 8	AA8	A	612	616	Right-handed 310
Helix 9	AA9	A	733	740	Right-handed alpha
Helix 10	AB1	A	742	750	Right-handed alpha
Helix 11	AB2	A	751	753	Right-handed 310
Helix 12	AB3	A	754	779	Right-handed alpha
Helix 13	AB4	A	812	822	Right-handed alpha
Helix 14	AB5	A	862	880	Right-handed alpha
Helix 15	AB6	A	882	886	Right-handed 310
Helix 16	AB7	A	893	905	Right-handed alpha
Helix 17	AB8	A	908	915	Right-handed alpha
Helix 18	AB9	A	915	937	Right-handed alpha
Helix 19	AC1	A	941	961	Right-handed alpha
Helix 20	AC2	A	962	964	Right-handed 310
Helix 21	AC3	A	972	980	Right-handed alpha
Helix 22	AC4	A	981	1029	Right-handed alpha
Helix 23	AC5	A	1136	1143	Right-handed alpha
Helix 24	AC6	B	290	300	Right-handed alpha
Helix 25	AC7	B	333	339	Right-handed alpha
Helix 26	AC8	B	345	349	Right-handed 310
Helix 27	AC9	B	361	367	Right-handed alpha
Helix 28	AD1	B	379	386	Right-handed 310
Helix 29	AD2	B	401	406	Right-handed 310
Helix 30	AD3	B	412	418	Right-handed alpha
Helix 31	AD4	B	612	616	Right-handed 310
Helix 32	AD5	B	733	740	Right-handed alpha
Helix 33	AD6	B	742	750	Right-handed alpha
Helix 34	AD7	B	751	753	Right-handed 310
Helix 35	AD8	B	754	779	Right-handed alpha
Helix 36	AD9	B	812	821	Right-handed alpha
Helix 37	AE1	B	846	851	Right-handed alpha
Helix 38	AE2	B	862	881	Right-handed alpha
Helix 39	AE3	B	882	886	Right-handed 310
Helix 40	AE4	B	893	905	Right-handed alpha
Helix 41	AE5	B	909	915	Right-handed alpha
Helix 42	AE6	B	915	937	Right-handed alpha
Helix 43	AE7	B	941	961	Right-handed alpha
Helix 44	AE8	B	962	964	Right-handed 310
Helix 45	AE9	B	972	980	Right-handed alpha
Helix 46	AF1	B	981	1029	Right-handed alpha
Helix 47	AF2	B	1136	1143	Right-handed alpha
Helix 48	AF3	C	290	300	Right-handed alpha
Helix 49	AF4	C	333	337	Right-handed 310
Helix 50	AF5	C	360	366	Right-handed alpha
Helix 51	AF6	C	380	384	Right-handed 310
Helix 52	AF7	C	401	403	Right-handed 310
Helix 53	AF8	C	412	418	Right-handed alpha
Helix 54	AF9	C	434	439	Right-handed alpha
Helix 55	AG1	C	612	616	Right-handed 310
Helix 56	AG2	C	733	739	Right-handed alpha
Helix 57	AG3	C	743	750	Right-handed alpha
Helix 58	AG4	C	751	753	Right-handed 310
Helix 59	AG5	C	754	779	Right-handed alpha
Helix 60	AG6	C	812	822	Right-handed alpha
Helix 61	AG7	C	846	851	Right-handed alpha
Helix 62	AG8	C	862	880	Right-handed alpha
Helix 63	AG9	C	882	886	Right-handed 310
Helix 64	AH1	C	893	905	Right-handed alpha
Helix 65	AH2	C	908	915	Right-handed alpha
Helix 66	AH3	C	915	937	Right-handed alpha
Helix 67	AH4	C	941	961	Right-handed alpha
Helix 68	AH5	C	962	964	Right-handed 310
Helix 69	AH6	C	972	980	Right-handed alpha
Helix 70	AH7	C	981	1029	Right-handed alpha
Helix 71	AH8	C	1137	1143	Right-handed alpha
Helix 72	AH9	D	61	64	Right-handed 310
Helix 73	AI1	D	86	90	Right-handed 310
Helix 74	AI2	F	86	90	Right-handed 310
Helix 75	AI3	L	86	90	Right-handed 310

There are 55 sheets in PDB entry 9ATO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	27	first strand
Strand 2	A	58	66	anti-parallel
Strand 3	A	257	265	anti-parallel
Strand 4	A	87	91	anti-parallel
Strand 5	A	185	193	anti-parallel
Strand 6	A	196	204	anti-parallel
Strand 7	A	221	226	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	C	561	563	parallel
Strand 3	C	569	573	anti-parallel
Strand 4	C	580	584	anti-parallel
Strand 5	C	542	550	anti-parallel
Strand 6	C	534	539	anti-parallel
Strand 7	C	321	324	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	52	first strand
Strand 2	A	267	275	anti-parallel
Strand 3	A	281	286	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	233	237	anti-parallel
Strand 3	A	100	104	anti-parallel
Strand 4	A	113	118	anti-parallel
Strand 5	A	123	128	anti-parallel
Strand 6	A	164	168	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	239	240	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	315	first strand
Strand 2	A	588	595	anti-parallel
Strand 3	A	605	609	anti-parallel
Strand 4	A	644	647	anti-parallel
Strand 5	A	638	640	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	324	first strand
Strand 2	A	535	539	parallel
Strand 3	A	542	550	anti-parallel
Strand 4	A	580	584	anti-parallel
Strand 5	A	569	573	anti-parallel
Strand 6	A	561	563	anti-parallel
Strand 7	B	39	40	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	354	first strand
Strand 2	A	390	399	anti-parallel
Strand 3	A	503	512	anti-parallel
Strand 4	A	427	433	anti-parallel
Strand 5	A	372	376	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	358	first strand
Strand 2	A	520	521	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	450	first strand
Strand 2	A	488	490	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	484	485	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	651	first strand
Strand 2	A	689	692	parallel
Strand 3	A	666	669	anti-parallel
Strand 4	A	660	663	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	697	698	first strand
Strand 2	B	783	784	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	724	first strand
Strand 2	A	1055	1073	anti-parallel
Strand 3	A	1043	1052	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	724	first strand
Strand 2	A	1055	1073	anti-parallel
Strand 3	A	1090	1093	anti-parallel
Strand 4	A	1098	1101	anti-parallel
Strand 5	A	1109	1110	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	730	732	first strand
Strand 2	A	854	856	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	784	first strand
Strand 2	C	697	698	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1116	1118	first strand
Strand 2	A	1082	1086	anti-parallel
Strand 3	A	1077	1079	anti-parallel
Strand 4	A	1129	1130	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	27	first strand
Strand 2	B	58	66	anti-parallel
Strand 3	B	257	265	anti-parallel
Strand 4	B	87	91	anti-parallel
Strand 5	B	184	193	anti-parallel
Strand 6	B	196	205	anti-parallel
Strand 7	B	220	225	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	52	first strand
Strand 2	B	267	275	anti-parallel
Strand 3	B	281	286	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	233	236	anti-parallel
Strand 3	B	100	104	anti-parallel
Strand 4	B	113	118	anti-parallel
Strand 5	B	123	132	anti-parallel
Strand 6	B	156	168	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	140	first strand
Strand 2	B	239	241	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	315	first strand
Strand 2	B	588	595	anti-parallel
Strand 3	B	605	609	anti-parallel
Strand 4	B	644	647	anti-parallel
Strand 5	B	638	640	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	324	first strand
Strand 2	B	534	539	parallel
Strand 3	B	542	550	anti-parallel
Strand 4	B	580	584	anti-parallel
Strand 5	B	569	573	anti-parallel
Strand 6	B	561	563	anti-parallel
Strand 7	C	39	40	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	354	first strand
Strand 2	B	391	399	anti-parallel
Strand 3	B	503	509	anti-parallel
Strand 4	B	428	433	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	450	first strand
Strand 2	B	488	490	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	651	first strand
Strand 2	B	689	692	parallel
Strand 3	B	666	669	anti-parallel
Strand 4	B	660	663	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	697	699	first strand
Strand 2	C	783	785	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	724	first strand
Strand 2	B	1055	1073	anti-parallel
Strand 3	B	1043	1052	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	724	first strand
Strand 2	B	1055	1073	anti-parallel
Strand 3	B	1090	1093	anti-parallel
Strand 4	B	1098	1101	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	731	first strand
Strand 2	B	855	857	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1077	1079	first strand
Strand 2	B	1082	1086	anti-parallel
Strand 3	B	1116	1118	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	27	first strand
Strand 2	C	58	66	anti-parallel
Strand 3	C	257	264	anti-parallel
Strand 4	C	87	91	anti-parallel
Strand 5	C	184	193	anti-parallel
Strand 6	C	196	205	anti-parallel
Strand 7	C	220	223	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	52	first strand
Strand 2	C	267	275	anti-parallel
Strand 3	C	281	286	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	82	first strand
Strand 2	C	233	236	anti-parallel
Strand 3	C	101	104	anti-parallel
Strand 4	C	113	118	anti-parallel
Strand 5	C	123	128	anti-parallel
Strand 6	C	164	168	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	140	first strand
Strand 2	C	239	241	parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	315	first strand
Strand 2	C	588	595	anti-parallel
Strand 3	C	605	609	anti-parallel
Strand 4	C	644	647	anti-parallel
Strand 5	C	638	640	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	354	first strand
Strand 2	C	390	399	anti-parallel
Strand 3	C	503	512	anti-parallel
Strand 4	C	427	433	anti-parallel
Strand 5	C	372	376	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	358	first strand
Strand 2	C	520	521	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	450	first strand
Strand 2	C	488	490	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	469	470	first strand
Strand 2	C	484	485	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	651	first strand
Strand 2	C	689	692	parallel
Strand 3	C	666	669	anti-parallel
Strand 4	C	660	663	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	724	first strand
Strand 2	C	1055	1072	anti-parallel
Strand 3	C	1043	1052	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	730	732	first strand
Strand 2	C	854	856	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1116	1118	first strand
Strand 2	C	1082	1086	anti-parallel
Strand 3	C	1077	1079	anti-parallel
Strand 4	C	1129	1130	parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1090	1093	first strand
Strand 2	C	1098	1101	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	111	113	parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	34	39	anti-parallel
Strand 4	D	92	97	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	7	first strand
Strand 2	F	17	26	anti-parallel
Strand 3	F	77	83	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	111	112	parallel

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There are 5 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	59	first strand
Strand 2	F	45	51	anti-parallel
Strand 3	F	34	39	anti-parallel
Strand 4	F	92	97	anti-parallel
Strand 5	F	104	105	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	7	first strand
Strand 2	L	18	25	anti-parallel
Strand 3	L	77	82	anti-parallel
Strand 4	L	67	72	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	111	113	parallel

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There are 5 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	58	first strand
Strand 2	L	45	51	anti-parallel
Strand 3	L	34	39	anti-parallel
Strand 4	L	92	97	anti-parallel
Strand 5	L	104	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ATO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ATO