Analysis of interatomic Contacts of Structural Units in PDB entry:
9ATP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ATP entry

There are 4 chains in PDB entry 9ATP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 22	LYS 525
B	THR 22	LYS 525
C	THR 22	LYS 525
D	GLN 1	GLN 1

There are 22 helices in PDB entry 9ATP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	290	300	Right-handed alpha
Helix 2	AA2	A	361	367	Right-handed 310
Helix 3	AA3	A	379	383	Right-handed 310
Helix 4	AA4	A	402	406	Right-handed 310
Helix 5	AA5	A	412	417	Right-handed alpha
Helix 6	AA6	B	290	300	Right-handed alpha
Helix 7	AA7	B	333	338	Right-handed alpha
Helix 8	AA8	B	345	349	Right-handed 310
Helix 9	AA9	B	361	368	Right-handed alpha
Helix 10	AB1	B	379	386	Right-handed 310
Helix 11	AB2	B	401	406	Right-handed 310
Helix 12	AB3	B	412	418	Right-handed alpha
Helix 13	AB4	C	290	300	Right-handed alpha
Helix 14	AB5	C	333	338	Right-handed alpha
Helix 15	AB6	C	361	368	Right-handed alpha
Helix 16	AB7	C	379	383	Right-handed 310
Helix 17	AB8	C	401	406	Right-handed 310
Helix 18	AB9	C	412	418	Right-handed alpha
Helix 19	AC1	D	61	64	Right-handed 310
Helix 20	AC2	D	86	90	Right-handed 310
Helix 21	AC3	E	86	90	Right-handed 310
Helix 22	AC4	L	86	90	Right-handed 310

There are 26 sheets in PDB entry 9ATP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	218	225	parallel
Strand 3	A	196	205	anti-parallel
Strand 4	A	184	193	anti-parallel
Strand 5	A	87	91	anti-parallel
Strand 6	A	261	265	anti-parallel
Strand 7	A	60	62	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	52	first strand
Strand 2	A	267	275	anti-parallel
Strand 3	A	281	286	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	168	first strand
Strand 2	A	123	126	anti-parallel
Strand 3	A	114	117	anti-parallel
Strand 4	A	100	104	anti-parallel
Strand 5	A	233	236	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	354	first strand
Strand 2	A	390	398	anti-parallel
Strand 3	A	504	512	anti-parallel
Strand 4	A	427	433	anti-parallel
Strand 5	A	372	375	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	450	first strand
Strand 2	A	488	490	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	484	485	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	27	first strand
Strand 2	B	58	62	anti-parallel
Strand 3	B	261	265	anti-parallel
Strand 4	B	87	91	anti-parallel
Strand 5	B	184	193	anti-parallel
Strand 6	B	196	205	anti-parallel
Strand 7	B	218	225	anti-parallel
Strand 8	B	33	34	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	52	first strand
Strand 2	B	267	275	anti-parallel
Strand 3	B	281	286	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	168	first strand
Strand 2	B	123	126	anti-parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	98	104	anti-parallel
Strand 5	B	233	238	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	354	first strand
Strand 2	B	391	399	anti-parallel
Strand 3	B	503	510	anti-parallel
Strand 4	B	427	433	anti-parallel
Strand 5	B	372	375	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	449	first strand
Strand 2	B	489	490	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	27	first strand
Strand 2	C	58	61	anti-parallel
Strand 3	C	261	265	anti-parallel
Strand 4	C	87	91	anti-parallel
Strand 5	C	185	193	anti-parallel
Strand 6	C	196	204	anti-parallel
Strand 7	C	218	225	anti-parallel
Strand 8	C	33	34	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	52	first strand
Strand 2	C	267	275	anti-parallel
Strand 3	C	281	286	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	104	first strand
Strand 2	C	113	118	anti-parallel
Strand 3	C	123	126	anti-parallel
Strand 4	C	165	168	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	156	158	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	354	first strand
Strand 2	C	391	399	anti-parallel
Strand 3	C	503	511	anti-parallel
Strand 4	C	427	433	anti-parallel
Strand 5	C	372	375	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	450	first strand
Strand 2	C	488	490	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	111	113	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	34	39	anti-parallel
Strand 4	D	92	97	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	77	83	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	111	114	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	59	first strand
Strand 2	E	45	51	anti-parallel
Strand 3	E	34	39	anti-parallel
Strand 4	E	92	97	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	7	first strand
Strand 2	L	17	25	anti-parallel
Strand 3	L	77	83	anti-parallel
Strand 4	L	67	72	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	111	114	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	59	first strand
Strand 2	L	45	51	anti-parallel
Strand 3	L	34	39	anti-parallel
Strand 4	L	92	97	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ATP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ATP