Analysis of interatomic Contacts of Structural Units in PDB entry:
9ATX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ATX entry

There is 1 chain in PDB entry 9ATX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0ASP 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9ATX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 16Right-handed alpha
Helix 2
AA2
A
23 32Right-handed alpha
Helix 3
AA3
A
34 36Right-handed 310
Helix 4
AA4
A
37 46Right-handed alpha
Helix 5
AA5
A
47 49Right-handed 310
Helix 6
AA6
A
79 84Right-handed alpha
Helix 7
AA7
A
84 93Right-handed alpha
Helix 8
AA8
A
100 109Right-handed alpha
Helix 9
AA9
A
111 128Right-handed alpha
Helix 10
AB1
A
143 159Right-handed alpha
Helix 11
AB2
A
170 186Right-handed alpha
Helix 12
AB3
A
190 210Right-handed alpha
Helix 13
AB4
A
218 223Right-handed 310
Helix 14
AB5
A
227 245Right-handed alpha
Helix 15
AB6
A
249 262Right-handed alpha
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There are 3 sheets in PDB entry 9ATX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
62 66anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
139 141anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
265 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il