Analysis of interatomic Contacts of Structural Units in PDB entry:
9AU5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9AU5 entry

There are 3 chains in PDB entry 9AU5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1824VAL 2590
E
 A 7 C 20
F
 G 10 G 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9AU5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1833 1847Right-handed alpha
Helix 2
AA2
A
1940 1952Right-handed alpha
Helix 3
AA3
A
1966 1977Right-handed alpha
Helix 4
AA4
A
1988 1997Right-handed alpha
Helix 5
AA5
A
2004 2013Right-handed alpha
Helix 6
AA6
A
2014 2021Right-handed 310
Helix 7
AA7
A
2041 2068Right-handed alpha
Helix 8
AA8
A
2069 2076Right-handed alpha
Helix 9
AA9
A
2076 2091Right-handed alpha
Helix 10
AB1
A
2096 2122Right-handed alpha
Helix 11
AB2
A
2129 2138Right-handed alpha
Helix 12
AB3
A
2180 2187Right-handed alpha
Helix 13
AB4
A
2192 2209Right-handed alpha
Helix 14
AB5
A
2210 2217Right-handed alpha
Helix 15
AB6
A
2314 2318Right-handed 310
Helix 16
AB7
A
2333 2342Right-handed alpha
Helix 17
AB8
A
2345 2354Right-handed alpha
Helix 18
AB9
A
2357 2368Right-handed alpha
Helix 19
AC1
A
2375 2391Right-handed alpha
Helix 20
AC2
A
2394 2403Right-handed alpha
Helix 21
AC3
A
2405 2420Right-handed alpha
Helix 22
AC4
A
2420 2438Right-handed alpha
Helix 23
AC5
A
2451 2455Right-handed 310
Helix 24
AC6
A
2457 2495Right-handed alpha
Helix 25
AC7
A
2501 2508Right-handed alpha
Helix 26
AC8
A
2550 2564Right-handed alpha
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There are 5 sheets in PDB entry 9AU5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1849 1850first strand
Strand 2
A
1961 1962parallel
Strand 3
A
1985 1986parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1853 1858first strand
Strand 2
A
1898 1904anti-parallel
Strand 3
A
1914 1916anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2232 2234first strand
Strand 2
A
2243 2245anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2534 2537first strand
Strand 2
A
2542 2547anti-parallel
Strand 3
A
2324 2331anti-parallel
Strand 4
A
2574 2579anti-parallel
Strand 5
A
2585 2587anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2439 2440first strand
Strand 2
A
2448 2449anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il