Analysis of interatomic Contacts of Structural Units in PDB entry:
9AUA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9AUA entry

There is 1 chain in PDB entry 9AUA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 13PRO 517
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 9AUA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 46Right-handed alpha
Helix 2
AA2
A
48 55Right-handed alpha
Helix 3
AA3
A
65 77Right-handed alpha
Helix 4
AA4
A
93 104Right-handed alpha
Helix 5
AA5
A
107 109Right-handed 310
Helix 6
AA6
A
131 143Right-handed alpha
Helix 7
AA7
A
148 159Right-handed alpha
Helix 8
AA8
A
174 188Right-handed alpha
Helix 9
AA9
A
191 193Right-handed 310
Helix 10
AB1
A
200 218Right-handed alpha
Helix 11
AB2
A
231 240Right-handed alpha
Helix 12
AB3
A
255 266Right-handed alpha
Helix 13
AB4
A
287 299Right-handed alpha
Helix 14
AB5
A
350 358Right-handed alpha
Helix 15
AB6
A
359 361Right-handed 310
Helix 16
AB7
A
366 378Right-handed alpha
Helix 17
AB8
A
379 400Right-handed alpha
Helix 18
AB9
A
416 424Right-handed alpha
Helix 19
AC1
A
442 447Right-handed alpha
Helix 20
AC2
A
466 477Right-handed alpha
Helix 21
AC3
A
478 488Right-handed alpha
Helix 22
AC4
A
503 516Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9AUA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
32 33anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
119 125anti-parallel
Strand 3
A
111 116anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 198first strand
Strand 2
A
340 344anti-parallel
Strand 3
A
322 326anti-parallel
Strand 4
A
301 305parallel
Strand 5
A
270 276parallel
Strand 6
A
223 227parallel
Strand 7
A
246 250parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 409first strand
Strand 2
A
433 438anti-parallel
Strand 3
A
494 498anti-parallel
Strand 4
A
463 465anti-parallel
Strand 5
A
452 453parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il