Analysis of interatomic Contacts of Structural Units in PDB entry:
9AUD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9AUD entry

There are 4 chains in PDB entry 9AUD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASP 1	VAL 186
D	GLN -25	GLY 188
A	GLY 1	ALA 203
B	VAL 1	ALA 253

There are 13 helices in PDB entry 9AUD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	47	54	Right-handed alpha
Helix 2	AA2	C	57	77	Right-handed alpha
Helix 3	AA3	D	48	50	Right-handed 310
Helix 4	AA4	D	51	61	Right-handed alpha
Helix 5	AA5	D	61	70	Right-handed alpha
Helix 6	AA6	D	70	75	Right-handed alpha
Helix 7	AA7	D	75	82	Right-handed alpha
Helix 8	AA8	D	82	87	Right-handed alpha
Helix 9	AA9	D	88	91	Right-handed 310
Helix 10	AB1	A	95	99	Right-handed 310
Helix 11	AB2	B	126	130	Right-handed 310
Helix 12	AB3	B	141	149	Right-handed alpha
Helix 13	AB4	B	208	212	Right-handed alpha

There are 18 sheets in PDB entry 9AUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	C	31	37	anti-parallel
Strand 3	C	21	28	anti-parallel
Strand 4	C	6	17	anti-parallel
Strand 5	D	4	14	anti-parallel
Strand 6	D	21	29	anti-parallel
Strand 7	D	33	38	anti-parallel
Strand 8	D	44	46	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	105	114	anti-parallel
Strand 3	C	147	155	anti-parallel
Strand 4	C	134	136	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	105	114	anti-parallel
Strand 3	C	147	155	anti-parallel
Strand 4	C	140	141	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	120	125	anti-parallel
Strand 3	C	163	168	anti-parallel
Strand 4	C	176	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	114	120	anti-parallel
Strand 3	D	153	158	anti-parallel
Strand 4	D	141	142	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	114	120	anti-parallel
Strand 3	D	153	158	anti-parallel
Strand 4	D	146	147	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	130	first strand
Strand 2	D	169	174	anti-parallel
Strand 3	D	182	186	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	23	26	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	123	128	parallel
Strand 3	A	101	108	anti-parallel
Strand 4	A	37	44	anti-parallel
Strand 5	A	51	56	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	123	128	parallel
Strand 3	A	101	108	anti-parallel
Strand 4	A	118	119	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	89	91	anti-parallel
Strand 3	A	76	79	anti-parallel
Strand 4	A	65	68	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	141	first strand
Strand 2	A	150	154	anti-parallel
Strand 3	A	191	195	anti-parallel
Strand 4	A	171	173	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	87	92	anti-parallel
Strand 4	B	74	80	anti-parallel
Strand 5	B	66	71	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	119	124	parallel
Strand 3	B	100	107	anti-parallel
Strand 4	B	38	44	anti-parallel
Strand 5	B	50	56	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	119	124	parallel
Strand 3	B	100	107	anti-parallel
Strand 4	B	114	115	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	138	first strand
Strand 2	B	150	160	anti-parallel
Strand 3	B	198	207	anti-parallel
Strand 4	B	180	182	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	138	first strand
Strand 2	B	150	160	anti-parallel
Strand 3	B	198	207	anti-parallel
Strand 4	B	187	188	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	165	171	anti-parallel
Strand 3	B	217	224	anti-parallel
Strand 4	B	243	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9AUD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9AUD