Analysis of interatomic Contacts of Structural Units in PDB entry:
9AUF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9AUF entry

There are 5 chains in PDB entry 9AUF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 44ALA 743
B
 G 1 A 146
C
 C 7 G 22
D
 C 36 G 49
c
 T 23 T 38
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9AUF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 75Right-handed alpha
Helix 2
AA2
A
80 90Right-handed alpha
Helix 3
AA3
A
91 93Right-handed 310
Helix 4
AA4
A
136 151Right-handed alpha
Helix 5
AA5
A
154 167Right-handed alpha
Helix 6
AA6
A
193 196Right-handed 310
Helix 7
AA7
A
197 207Right-handed alpha
Helix 8
AA8
A
212 225Right-handed alpha
Helix 9
AA9
A
228 240Right-handed alpha
Helix 10
AB1
A
242 255Right-handed alpha
Helix 11
AB2
A
573 575Right-handed 310
Helix 12
AB3
A
576 583Right-handed 310
Helix 13
AB4
A
585 599Right-handed alpha
Helix 14
AB5
A
608 615Right-handed alpha
Helix 15
AB6
A
636 638Right-handed 310
Helix 16
AB7
A
736 738Right-handed 310
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There are 4 sheets in PDB entry 9AUF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 562first strand
Strand 2
A
565 571anti-parallel
Strand 3
A
627 631anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
640 643first strand
Strand 2
A
646 649anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
667 673first strand
Strand 2
A
654 661anti-parallel
Strand 3
A
691 696anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
733 734first strand
Strand 2
A
721 724anti-parallel
Strand 3
A
710 715anti-parallel
Strand 4
A
701 704anti-parallel
Strand 5
A
740 742anti-parallel
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