Analysis of interatomic Contacts of Structural Units in PDB entry:
9AV2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9AV2 entry

There is 1 chain in PDB entry 9AV2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1GLN 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9AV2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 12Right-handed 310
Helix 2
AA2
A
24 28Right-handed 310
Helix 3
AA3
A
54 65Right-handed alpha
Helix 4
AA4
A
75 89Right-handed alpha
Helix 5
AA5
A
230 240Right-handed alpha
Helix 6
AA6
A
254 268Right-handed alpha
Helix 7
AA7
A
280 290Right-handed alpha
Helix 8
AA8
A
306 312Right-handed alpha
Helix 9
AA9
A
316 328Right-handed alpha
Helix 10
AB1
A
343 353Right-handed alpha
Helix 11
AB2
A
390 395Right-handed alpha
Helix 12
AB3
A
426 446Right-handed alpha
Helix 13
AB4
A
449 457Right-handed alpha
Helix 14
AB5
A
463 468Right-handed alpha
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There are 4 sheets in PDB entry 9AV2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
459 461anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
39 40anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
357 360parallel
Strand 3
A
335 338parallel
Strand 4
A
294 297parallel
Strand 5
A
272 278parallel
Strand 6
A
244 248parallel
Strand 7
A
221 224parallel
Strand 8
A
69 70parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
A
381 386anti-parallel
Strand 3
A
418 422anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il