Analysis of interatomic Contacts of Structural Units in PDB entry:
9AV6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9AV6 entry

There is 1 chain in PDB entry 9AV6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ARG 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9AV6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 11Right-handed alpha
Helix 2
AA2
A
23 25Right-handed 310
Helix 3
AA3
A
62 76Right-handed alpha
Helix 4
AA4
A
108 113Right-handed 310
Helix 5
AA5
A
117 138Right-handed alpha
Helix 6
AA6
A
146 148Right-handed 310
Helix 7
AA7
A
187 192Right-handed alpha
Helix 8
AA8
A
199 216Right-handed alpha
Helix 9
AA9
A
225 238Right-handed alpha
Helix 10
AB1
A
238 250Right-handed alpha
Helix 11
AB2
A
254 262Right-handed alpha
Helix 12
AB3
A
282 293Right-handed alpha
Helix 13
AB4
A
296 300Right-handed 310
Helix 14
AB5
A
302 308Right-handed alpha
Helix 15
AB6
A
309 313Right-handed 310
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There are 3 sheets in PDB entry 9AV6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 35first strand
Strand 2
A
39 46anti-parallel
Strand 3
A
52 58anti-parallel
Strand 4
A
97 102anti-parallel
Strand 5
A
85 90anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
168 169anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
159 161anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il