Analysis of interatomic Contacts of Structural Units in PDB entry:
9AVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9AVH entry

There is 1 chain in PDB entry 9AVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9AVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
25 34Right-handed alpha
Helix 3
AA3
A
53 58Right-handed alpha
Helix 4
AA4
A
59 66Right-handed 310
Helix 5
AA5
A
80 84Right-handed 310
Helix 6
AA6
A
97 102Right-handed 310
Helix 7
AA7
A
111 123Right-handed alpha
Helix 8
AA8
A
124 127Right-handed 310
Helix 9
AA9
A
128 139Right-handed alpha
Helix 10
AB1
A
156 160Right-handed 310
Helix 11
AB2
A
176 186Right-handed alpha
Helix 12
AB3
A
219 224Right-handed alpha
Helix 13
AB4
A
224 229Right-handed alpha
Helix 14
AB5
A
283 295Right-handed alpha
Helix 15
AB6
A
299 307Right-handed alpha
Helix 16
AB7
A
339 345Right-handed alpha
Helix 17
AB8
A
345 360Right-handed alpha
Helix 18
AB9
A
362 366Right-handed 310
Helix 19
AC1
A
381 386Right-handed 310
Helix 20
AC2
A
456 474Right-handed alpha
Helix 21
AC3
A
476 481Right-handed alpha
Helix 22
AC4
A
488 492Right-handed alpha
Helix 23
AC5
A
496 508Right-handed alpha
Helix 24
AC6
A
546 550Right-handed 310
Helix 25
AC7
A
558 578Right-handed alpha
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There are 9 sheets in PDB entry 9AVH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 237first strand
Strand 2
A
41 44parallel
Strand 3
A
14 20parallel
Strand 4
A
271 281parallel
Strand 5
A
254 263anti-parallel
Strand 6
A
241 251anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 237first strand
Strand 2
A
41 44parallel
Strand 3
A
14 20parallel
Strand 4
A
271 281parallel
Strand 5
A
542 544parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
89 93anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 142first strand
Strand 2
A
165 167parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
371 375anti-parallel
Strand 3
A
399 404anti-parallel
Strand 4
A
420 427anti-parallel
Strand 5
A
325 333anti-parallel
Strand 6
A
483 487anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
371 375anti-parallel
Strand 3
A
399 404anti-parallel
Strand 4
A
420 427anti-parallel
Strand 5
A
325 333anti-parallel
Strand 6
A
509 510anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
216 217anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 298first strand
Strand 2
A
312 313parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 321first strand
Strand 2
A
434 437anti-parallel
Strand 3
A
448 450anti-parallel
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