Analysis of interatomic Contacts of Structural Units in PDB entry:
9AVJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9AVJ entry

There are 7 chains in PDB entry 9AVJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 28	VAL 499
B	ASP 27	LYS 495
C	SER 26	THR 497
D	THR 2	MET 469
E	THR 2	ALA 466
F	THR 2	GLY 470
G	SER 2	LEU 283

There are126 helices in PDB entry 9AVJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	100	104	Right-handed 310
Helix 2	AA2	A	135	139	Right-handed 310
Helix 3	AA3	A	150	156	Right-handed alpha
Helix 4	AA4	A	174	186	Right-handed alpha
Helix 5	AA5	A	201	214	Right-handed alpha
Helix 6	AA6	A	215	219	Right-handed 310
Helix 7	AA7	A	231	252	Right-handed alpha
Helix 8	AA8	A	264	277	Right-handed alpha
Helix 9	AA9	A	289	299	Right-handed alpha
Helix 10	AB1	A	328	336	Right-handed alpha
Helix 11	AB2	A	345	350	Right-handed alpha
Helix 12	AB3	A	372	377	Right-handed alpha
Helix 13	AB4	A	378	397	Right-handed alpha
Helix 14	AB5	A	405	420	Right-handed alpha
Helix 15	AB6	A	429	442	Right-handed alpha
Helix 16	AB7	A	452	468	Right-handed alpha
Helix 17	AB8	A	469	479	Right-handed alpha
Helix 18	AB9	A	483	496	Right-handed alpha
Helix 19	AC1	B	34	36	Right-handed 310
Helix 20	AC2	B	78	82	Right-handed 310
Helix 21	AC3	B	100	104	Right-handed 310
Helix 22	AC4	B	150	155	Right-handed alpha
Helix 23	AC5	B	175	185	Right-handed alpha
Helix 24	AC6	B	186	190	Right-handed 310
Helix 25	AC7	B	201	216	Right-handed alpha
Helix 26	AC8	B	217	219	Right-handed 310
Helix 27	AC9	B	231	252	Right-handed alpha
Helix 28	AD1	B	262	277	Right-handed alpha
Helix 29	AD2	B	282	286	Right-handed 310
Helix 30	AD3	B	287	288	Right-handed 310
Helix 31	AD4	B	289	299	Right-handed alpha
Helix 32	AD5	B	328	338	Right-handed alpha
Helix 33	AD6	B	348	352	Right-handed 310
Helix 34	AD7	B	367	371	Right-handed 310
Helix 35	AD8	B	372	379	Right-handed alpha
Helix 36	AD9	B	381	396	Right-handed alpha
Helix 37	AE1	B	405	419	Right-handed alpha
Helix 38	AE2	B	429	442	Right-handed alpha
Helix 39	AE3	B	449	451	Right-handed 310
Helix 40	AE4	B	452	468	Right-handed alpha
Helix 41	AE5	B	468	479	Right-handed alpha
Helix 42	AE6	B	483	495	Right-handed alpha
Helix 43	AE7	C	100	104	Right-handed 310
Helix 44	AE8	C	150	156	Right-handed alpha
Helix 45	AE9	C	175	186	Right-handed alpha
Helix 46	AF1	C	187	189	Right-handed 310
Helix 47	AF2	C	201	203	Right-handed 310
Helix 48	AF3	C	204	216	Right-handed alpha
Helix 49	AF4	C	217	219	Right-handed 310
Helix 50	AF5	C	232	237	Right-handed alpha
Helix 51	AF6	C	237	250	Right-handed alpha
Helix 52	AF7	C	263	276	Right-handed alpha
Helix 53	AF8	C	289	299	Right-handed alpha
Helix 54	AF9	C	322	325	Right-handed 310
Helix 55	AG1	C	328	336	Right-handed alpha
Helix 56	AG2	C	345	350	Right-handed alpha
Helix 57	AG3	C	372	380	Right-handed alpha
Helix 58	AG4	C	381	397	Right-handed alpha
Helix 59	AG5	C	405	420	Right-handed alpha
Helix 60	AG6	C	429	441	Right-handed alpha
Helix 61	AG7	C	452	468	Right-handed alpha
Helix 62	AG8	C	468	479	Right-handed alpha
Helix 63	AG9	C	483	497	Right-handed alpha
Helix 64	AH1	D	88	92	Right-handed 310
Helix 65	AH2	D	139	146	Right-handed alpha
Helix 66	AH3	D	163	177	Right-handed alpha
Helix 67	AH4	D	191	206	Right-handed alpha
Helix 68	AH5	D	207	209	Right-handed 310
Helix 69	AH6	D	221	242	Right-handed alpha
Helix 70	AH7	D	254	266	Right-handed alpha
Helix 71	AH8	D	280	290	Right-handed alpha
Helix 72	AH9	D	315	322	Right-handed alpha
Helix 73	AI1	D	332	339	Right-handed alpha
Helix 74	AI2	D	355	360	Right-handed alpha
Helix 75	AI3	D	360	388	Right-handed alpha
Helix 76	AI4	D	393	410	Right-handed alpha
Helix 77	AI5	D	417	422	Right-handed alpha
Helix 78	AI6	D	429	443	Right-handed alpha
Helix 79	AI7	D	449	454	Right-handed 310
Helix 80	AI8	D	459	469	Right-handed alpha
Helix 81	AI9	E	19	22	Right-handed 310
Helix 82	AJ1	E	88	92	Right-handed 310
Helix 83	AJ2	E	124	128	Right-handed 310
Helix 84	AJ3	E	141	146	Right-handed alpha
Helix 85	AJ4	E	165	179	Right-handed alpha
Helix 86	AJ5	E	191	204	Right-handed alpha
Helix 87	AJ6	E	205	206	Right-handed 310
Helix 88	AJ7	E	207	209	Right-handed 310
Helix 89	AJ8	E	221	226	Right-handed alpha
Helix 90	AJ9	E	227	242	Right-handed alpha
Helix 91	AK1	E	253	269	Right-handed alpha
Helix 92	AK2	E	273	277	Right-handed 310
Helix 93	AK3	E	280	285	Right-handed alpha
Helix 94	AK4	E	285	290	Right-handed alpha
Helix 95	AK5	E	315	323	Right-handed alpha
Helix 96	AK6	E	332	337	Right-handed alpha
Helix 97	AK7	E	355	360	Right-handed alpha
Helix 98	AK8	E	360	385	Right-handed alpha
Helix 99	AK9	E	393	410	Right-handed alpha
Helix 100	AL1	E	415	420	Right-handed 310
Helix 101	AL2	E	429	443	Right-handed alpha
Helix 102	AL3	E	449	454	Right-handed 310
Helix 103	AL4	E	458	466	Right-handed alpha
Helix 104	AL5	F	88	92	Right-handed 310
Helix 105	AL6	F	139	146	Right-handed alpha
Helix 106	AL7	F	163	175	Right-handed alpha
Helix 107	AL8	F	191	204	Right-handed alpha
Helix 108	AL9	F	206	209	Right-handed 310
Helix 109	AM1	F	223	242	Right-handed alpha
Helix 110	AM2	F	254	269	Right-handed alpha
Helix 111	AM3	F	280	290	Right-handed alpha
Helix 112	AM4	F	315	320	Right-handed alpha
Helix 113	AM5	F	321	324	Right-handed 310
Helix 114	AM6	F	332	337	Right-handed alpha
Helix 115	AM7	F	355	360	Right-handed alpha
Helix 116	AM8	F	360	380	Right-handed alpha
Helix 117	AM9	F	380	387	Right-handed alpha
Helix 118	AN1	F	393	410	Right-handed alpha
Helix 119	AN2	F	414	418	Right-handed 310
Helix 120	AN3	F	429	442	Right-handed alpha
Helix 121	AN4	F	458	469	Right-handed alpha
Helix 122	AN5	G	3	51	Right-handed alpha
Helix 123	AN6	G	87	90	Right-handed 310
Helix 124	AN7	G	91	105	Right-handed alpha
Helix 125	AN8	G	118	127	Right-handed alpha
Helix 126	AN9	G	217	283	Right-handed alpha

There are 24 sheets in PDB entry 9AVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	35	first strand
Strand 2	A	38	42	anti-parallel
Strand 3	A	71	75	anti-parallel
Strand 4	A	60	66	anti-parallel
Strand 5	A	52	55	anti-parallel
Strand 6	A	87	90	anti-parallel
Strand 7	A	29	35	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	99	first strand
Strand 2	A	125	128	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	221	226	parallel
Strand 3	A	192	198	parallel
Strand 4	A	255	260	parallel
Strand 5	A	312	316	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	320	first strand
Strand 2	A	167	169	parallel
Strand 3	A	342	343	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	38	41	anti-parallel
Strand 3	B	71	75	anti-parallel
Strand 4	B	60	66	anti-parallel
Strand 5	B	51	55	anti-parallel
Strand 6	B	88	94	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	126	128	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	107	109	anti-parallel
Strand 3	B	221	226	parallel
Strand 4	B	192	198	parallel
Strand 5	B	256	260	parallel
Strand 6	B	313	316	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	320	first strand
Strand 2	B	166	169	parallel
Strand 3	B	340	344	parallel
Strand 4	B	362	364	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	35	first strand
Strand 2	C	38	43	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	60	66	anti-parallel
Strand 5	C	52	55	anti-parallel
Strand 6	C	87	90	anti-parallel
Strand 7	C	28	35	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	126	128	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	221	226	parallel
Strand 3	C	192	198	parallel
Strand 4	C	256	260	parallel
Strand 5	C	313	320	parallel
Strand 6	C	166	169	parallel
Strand 7	C	340	344	parallel
Strand 8	C	363	364	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	9	first strand
Strand 2	D	13	17	anti-parallel
Strand 3	D	58	62	anti-parallel
Strand 4	D	44	53	anti-parallel
Strand 5	D	29	34	anti-parallel
Strand 6	D	75	78	anti-parallel
Strand 7	D	3	9	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	87	first strand
Strand 2	D	114	117	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	96	first strand
Strand 2	D	211	214	parallel
Strand 3	D	182	187	parallel
Strand 4	D	247	252	parallel
Strand 5	D	300	307	parallel
Strand 6	D	153	158	parallel
Strand 7	D	327	330	parallel
Strand 8	D	350	351	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	135	first strand
Strand 2	D	148	149	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	10	first strand
Strand 2	E	13	17	anti-parallel
Strand 3	E	58	63	anti-parallel
Strand 4	E	47	53	anti-parallel
Strand 5	E	29	31	anti-parallel
Strand 6	E	75	78	anti-parallel
Strand 7	E	4	10	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	86	first strand
Strand 2	E	115	117	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	96	first strand
Strand 2	E	211	217	parallel
Strand 3	E	182	190	parallel
Strand 4	E	247	251	parallel
Strand 5	E	300	305	parallel
Strand 6	E	153	156	parallel
Strand 7	E	327	331	parallel
Strand 8	E	344	351	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	135	first strand
Strand 2	E	148	149	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	9	first strand
Strand 2	F	13	17	anti-parallel
Strand 3	F	59	63	anti-parallel
Strand 4	F	46	53	anti-parallel
Strand 5	F	28	32	anti-parallel
Strand 6	F	75	82	anti-parallel
Strand 7	F	4	9	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	86	first strand
Strand 2	F	115	117	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	96	first strand
Strand 2	F	211	215	parallel
Strand 3	F	182	187	parallel
Strand 4	F	247	251	parallel
Strand 5	F	300	307	parallel
Strand 6	F	153	158	parallel
Strand 7	F	327	330	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	135	first strand
Strand 2	F	148	149	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	117	first strand
Strand 2	G	78	80	parallel
Strand 3	G	169	172	parallel
Strand 4	G	182	185	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9AVJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9AVJ