Analysis of interatomic Contacts of Structural Units in PDB entry:
9AWE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9AWE entry

There are 4 chains in PDB entry 9AWE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 2	LYS 219
D	MET 4	GLY 212
A	SER 2	ASP 154
C	LEU 10	PRO 63

There are 14 helices in PDB entry 9AWE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	63	66	Right-handed 310
Helix 2	AA2	B	88	92	Right-handed 310
Helix 3	AA3	B	161	163	Right-handed 310
Helix 4	AA4	B	206	209	Right-handed 310
Helix 5	AA5	D	29	31	Right-handed 310
Helix 6	AA6	D	79	83	Right-handed 310
Helix 7	AA7	D	121	126	Right-handed alpha
Helix 8	AA8	D	183	189	Right-handed alpha
Helix 9	AA9	A	80	84	Right-handed 310
Helix 10	AB1	A	85	90	Right-handed alpha
Helix 11	AB2	A	119	125	Right-handed alpha
Helix 12	AB3	A	131	133	Right-handed 310
Helix 13	AB4	C	27	38	Right-handed alpha
Helix 14	AB5	C	42	46	Right-handed 310

There are 14 sheets in PDB entry 9AWE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	19	26	anti-parallel
Strand 3	B	79	84	anti-parallel
Strand 4	B	69	74	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	112	116	parallel
Strand 3	B	93	101	anti-parallel
Strand 4	B	35	40	anti-parallel
Strand 5	B	47	52	anti-parallel
Strand 6	B	59	61	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	112	116	parallel
Strand 3	B	93	101	anti-parallel
Strand 4	B	104	108	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	140	150	anti-parallel
Strand 3	B	181	190	anti-parallel
Strand 4	B	168	170	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	140	150	anti-parallel
Strand 3	B	181	190	anti-parallel
Strand 4	B	174	175	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	159	first strand
Strand 2	B	200	205	anti-parallel
Strand 3	B	210	215	anti-parallel
Strand 4	C	17	20	anti-parallel
Strand 5	C	11	13	anti-parallel
Strand 6	C	58	60	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	85	91	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	85	91	anti-parallel
Strand 4	D	96	98	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	173	182	anti-parallel
Strand 4	D	159	163	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	146	150	anti-parallel
Strand 3	D	192	196	anti-parallel
Strand 4	D	205	209	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	11	first strand
Strand 2	A	22	30	anti-parallel
Strand 3	A	68	76	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	104	117	anti-parallel
Strand 4	A	93	101	anti-parallel
Strand 5	A	38	45	anti-parallel
Strand 6	A	54	62	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	104	117	anti-parallel
Strand 4	A	145	148	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9AWE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9AWE