Analysis of interatomic Contacts of Structural Units in PDB entry:
9AXF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9AXF entry

There are 7 chains in PDB entry 9AXF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
TYR 20LYS 882
Q
TYR 20LYS 863
A
CYS 3VAL 246
B
GLU 3ASN 340
G
SER 8GLU 63
H
ASP 21LEU 267
N
GLN 1VAL 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 9AXF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
R
64 84Right-handed alpha
Helix 2
AA2
R
103 116Right-handed alpha
Helix 3
AA3
R
117 122Right-handed 310
Helix 4
AA4
R
146 160Right-handed alpha
Helix 5
AA5
R
171 176Right-handed 310
Helix 6
AA6
R
190 204Right-handed alpha
Helix 7
AA7
R
218 233Right-handed alpha
Helix 8
AA8
R
248 262Right-handed alpha
Helix 9
AA9
R
272 287Right-handed alpha
Helix 10
AB1
R
307 309Right-handed 310
Helix 11
AB2
R
310 315Right-handed alpha
Helix 12
AB3
R
329 336Right-handed alpha
Helix 13
AB4
R
347 357Right-handed alpha
Helix 14
AB5
R
400 404Right-handed 310
Helix 15
AB6
R
415 436Right-handed alpha
Helix 16
AB7
R
444 448Right-handed 310
Helix 17
AB8
R
451 455Right-handed 310
Helix 18
AB9
R
456 466Right-handed alpha
Helix 19
AC1
R
529 533Right-handed 310
Helix 20
AC2
R
610 637Right-handed alpha
Helix 21
AC3
R
640 646Right-handed alpha
Helix 22
AC4
R
647 666Right-handed alpha
Helix 23
AC5
R
673 707Right-handed alpha
Helix 24
AC6
R
716 746Right-handed alpha
Helix 25
AC7
R
769 794Right-handed alpha
Helix 26
AC8
R
804 814Right-handed alpha
Helix 27
AC9
R
816 821Right-handed alpha
Helix 28
AD1
R
821 827Right-handed alpha
Helix 29
AD2
R
830 862Right-handed alpha
Helix 30
AD3
R
863 867Right-handed 310
Helix 31
AD4
R
868 882Right-handed alpha
Helix 32
AD5
Q
21 25Right-handed 310
Helix 33
AD6
Q
64 84Right-handed alpha
Helix 34
AD7
Q
103 115Right-handed alpha
Helix 35
AD8
Q
115 121Right-handed alpha
Helix 36
AD9
Q
146 159Right-handed alpha
Helix 37
AE1
Q
171 176Right-handed 310
Helix 38
AE2
Q
190 204Right-handed alpha
Helix 39
AE3
Q
218 233Right-handed alpha
Helix 40
AE4
Q
248 262Right-handed alpha
Helix 41
AE5
Q
272 287Right-handed alpha
Helix 42
AE6
Q
307 309Right-handed 310
Helix 43
AE7
Q
310 315Right-handed alpha
Helix 44
AE8
Q
329 336Right-handed alpha
Helix 45
AE9
Q
347 357Right-handed alpha
Helix 46
AF1
Q
400 404Right-handed 310
Helix 47
AF2
Q
415 436Right-handed alpha
Helix 48
AF3
Q
444 448Right-handed 310
Helix 49
AF4
Q
456 466Right-handed alpha
Helix 50
AF5
Q
525 528Right-handed 310
Helix 51
AF6
Q
529 533Right-handed 310
Helix 52
AF7
Q
610 637Right-handed alpha
Helix 53
AF8
Q
640 645Right-handed alpha
Helix 54
AF9
Q
647 665Right-handed alpha
Helix 55
AG1
Q
666 669Right-handed 310
Helix 56
AG2
Q
673 699Right-handed alpha
Helix 57
AG3
Q
723 746Right-handed alpha
Helix 58
AG4
Q
769 794Right-handed alpha
Helix 59
AG5
Q
798 828Right-handed alpha
Helix 60
AG6
Q
832 853Right-handed alpha
Helix 61
AG7
Q
853 862Right-handed alpha
Helix 62
AG8
A
6 33Right-handed alpha
Helix 63
AG9
A
95 100Right-handed 310
Helix 64
AH1
A
117 130Right-handed alpha
Helix 65
AH2
A
131 135Right-handed 310
Helix 66
AH3
A
145 156Right-handed alpha
Helix 67
AH4
A
159 164Right-handed alpha
Helix 68
AH5
A
165 168Right-handed 310
Helix 69
AH6
A
183 202Right-handed alpha
Helix 70
AH7
A
222 243Right-handed alpha
Helix 71
AH8
B
4 24Right-handed alpha
Helix 72
AH9
B
29 34Right-handed alpha
Helix 73
AI1
G
9 24Right-handed alpha
Helix 74
AI2
G
29 44Right-handed alpha
Helix 75
AI3
H
48 52Right-handed 310
Helix 76
AI4
H
82 85Right-handed 310
Helix 77
AI5
H
107 111Right-handed 310
Helix 78
AI6
H
240 244Right-handed 310
Helix 79
AI7
N
28 32Right-handed 310
Helix 80
AI8
N
87 91Right-handed 310
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There are 31 sheets in PDB entry 9AXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
26 28first strand
Strand 2
R
93 99anti-parallel
Strand 3
R
32 38parallel
Strand 4
R
138 142parallel
Strand 5
R
164 166parallel
Strand 6
R
184 185parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
130 131first strand
Strand 2
Q
129 130anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
236 243first strand
Strand 2
R
208 214parallel
Strand 3
R
266 270parallel
Strand 4
R
292 295parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
318 322first strand
Strand 2
R
489 496anti-parallel
Strand 3
R
503 511anti-parallel
Strand 4
R
521 523anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
469 470first strand
Strand 2
R
476 477anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
550 551first strand
Strand 2
R
566 567anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
572 573first strand
Strand 2
R
583 584anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
589 591first strand
Strand 2
R
598 600anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
602 604first strand
Strand 2
R
760 766parallel
Strand 3
R
749 753anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
26 28first strand
Strand 2
Q
93 99anti-parallel
Strand 3
Q
32 38parallel
Strand 4
Q
138 142parallel
Strand 5
Q
164 166parallel
Strand 6
Q
183 185parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
236 243first strand
Strand 2
Q
208 214parallel
Strand 3
Q
266 270parallel
Strand 4
Q
292 295parallel
Strand 5
Q
318 322parallel
Strand 6
Q
489 496anti-parallel
Strand 7
Q
503 511anti-parallel
Strand 8
Q
521 523anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
469 470first strand
Strand 2
Q
476 477anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
550 554first strand
Strand 2
Q
563 567anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
589 591first strand
Strand 2
Q
598 600anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
602 604first strand
Strand 2
Q
760 766parallel
Strand 3
Q
749 753anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
71 75first strand
Strand 2
A
80 84anti-parallel
Strand 3
A
34 39parallel
Strand 4
A
105 111parallel
Strand 5
A
138 144parallel
Strand 6
A
211 215parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
46 51first strand
Strand 2
B
336 340anti-parallel
Strand 3
B
327 331anti-parallel
Strand 4
B
315 320anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
88 94anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
100 105first strand
Strand 2
B
111 116anti-parallel
Strand 3
B
120 125anti-parallel
Strand 4
B
134 140anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
146 153first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
165 170anti-parallel
Strand 4
B
175 181anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
187 192first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
207 212anti-parallel
Strand 4
B
217 223anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
259 264anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
273 278first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
294 298anti-parallel
Strand 4
B
304 308anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
23 27first strand
Strand 2
H
38 45anti-parallel
Strand 3
H
98 103anti-parallel
Strand 4
H
88 93anti-parallel
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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
30 32first strand
Strand 2
H
136 139parallel
Strand 3
H
112 119anti-parallel
Strand 4
H
53 59anti-parallel
Strand 5
H
65 71anti-parallel
Strand 6
H
78 80anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
30 32first strand
Strand 2
H
136 139parallel
Strand 3
H
112 119anti-parallel
Strand 4
H
130 131anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
160 162first strand
Strand 2
H
175 181anti-parallel
Strand 3
H
231 236anti-parallel
Strand 4
H
223 228anti-parallel
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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
214 215first strand
Strand 2
H
206 210anti-parallel
Strand 3
H
194 199anti-parallel
Strand 4
H
246 251anti-parallel
Strand 5
H
258 259anti-parallel
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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
214 215first strand
Strand 2
H
206 210anti-parallel
Strand 3
H
194 199anti-parallel
Strand 4
H
246 251anti-parallel
Strand 5
H
263 264anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
3 7first strand
Strand 2
N
17 25anti-parallel
Strand 3
N
78 84anti-parallel
Strand 4
N
68 73anti-parallel
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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
58 60first strand
Strand 2
N
45 51anti-parallel
Strand 3
N
34 39anti-parallel
Strand 4
N
92 98anti-parallel
Strand 5
N
122 124anti-parallel
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