Analysis of interatomic Contacts of Structural Units in PDB entry:
9AXJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9AXJ entry

There is 1 chain in PDB entry 9AXJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 3PRO 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9AXJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
53 68Right-handed alpha
Helix 3
AA3
A
77 90Right-handed alpha
Helix 4
AA4
A
103 113Right-handed alpha
Helix 5
AA5
A
128 136Right-handed alpha
Helix 6
AA6
A
157 168Right-handed alpha
Helix 7
AA7
A
179 184Right-handed alpha
Helix 8
AA8
A
185 190Right-handed 310
Helix 9
AA9
A
217 232Right-handed alpha
Helix 10
AB1
A
236 248Right-handed alpha
Helix 11
AB2
A
249 269Right-handed alpha
Helix 12
AB3
A
287 295Right-handed alpha
Helix 13
AB4
A
308 320Right-handed alpha
Helix 14
AB5
A
344 348Right-handed 310
Helix 15
AB6
A
367 380Right-handed alpha
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There are 2 sheets in PDB entry 9AXJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 75first strand
Strand 2
A
211 215anti-parallel
Strand 3
A
193 197anti-parallel
Strand 4
A
171 175parallel
Strand 5
A
140 146parallel
Strand 6
A
95 99parallel
Strand 7
A
120 124parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 278first strand
Strand 2
A
301 306anti-parallel
Strand 3
A
358 362anti-parallel
Strand 4
A
335 337anti-parallel
Strand 5
A
324 325parallel
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