Analysis of interatomic Contacts of Structural Units in PDB entry:
9AY0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9AY0 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 9AY0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 12ALA 907
A
 ASP 909ALA 910
A
 LEU 912GLY 913
A
 ILE 915ASN 1515
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 9AY0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 36Right-handed alpha
Helix 2
AA2
A
36 59Right-handed alpha
Helix 3
AA3
A
69 90Right-handed alpha
Helix 4
AA4
A
96 99Right-handed 310
Helix 5
AA5
A
100 128Right-handed alpha
Helix 6
AA6
A
132 161Right-handed alpha
Helix 7
AA7
A
166 189Right-handed alpha
Helix 8
AA8
A
199 203Right-handed 310
Helix 9
AA9
A
210 215Right-handed 310
Helix 10
AB1
A
216 223Right-handed alpha
Helix 11
AB2
A
226 236Right-handed alpha
Helix 12
AB3
A
251 270Right-handed alpha
Helix 13
AB4
A
274 284Right-handed alpha
Helix 14
AB5
A
284 301Right-handed alpha
Helix 15
AB6
A
303 327Right-handed alpha
Helix 16
AB7
A
342 390Right-handed alpha
Helix 17
AB8
A
393 399Right-handed alpha
Helix 18
AB9
A
401 411Right-handed alpha
Helix 19
AC1
A
411 420Right-handed alpha
Helix 20
AC2
A
421 423Right-handed 310
Helix 21
AC3
A
424 445Right-handed alpha
Helix 22
AC4
A
446 448Right-handed 310
Helix 23
AC5
A
449 493Right-handed alpha
Helix 24
AC6
A
493 501Right-handed alpha
Helix 25
AC7
A
502 517Right-handed alpha
Helix 26
AC8
A
517 555Right-handed alpha
Helix 27
AC9
A
560 573Right-handed alpha
Helix 28
AD1
A
574 602Right-handed alpha
Helix 29
AD2
A
668 677Right-handed alpha
Helix 30
AD3
A
707 713Right-handed alpha
Helix 31
AD4
A
718 728Right-handed alpha
Helix 32
AD5
A
730 739Right-handed alpha
Helix 33
AD6
A
755 769Right-handed alpha
Helix 34
AD7
A
779 783Right-handed 310
Helix 35
AD8
A
784 795Right-handed alpha
Helix 36
AD9
A
813 820Right-handed alpha
Helix 37
AE1
A
836 844Right-handed alpha
Helix 38
AE2
A
920 928Right-handed alpha
Helix 39
AE3
A
935 946Right-handed alpha
Helix 40
AE4
A
947 983Right-handed alpha
Helix 41
AE5
A
987 1017Right-handed alpha
Helix 42
AE6
A
1017 1034Right-handed alpha
Helix 43
AE7
A
1037 1044Right-handed alpha
Helix 44
AE8
A
1045 1055Right-handed alpha
Helix 45
AE9
A
1055 1063Right-handed alpha
Helix 46
AF1
A
1063 1087Right-handed alpha
Helix 47
AF2
A
1089 1091Right-handed 310
Helix 48
AF3
A
1092 1126Right-handed alpha
Helix 49
AF4
A
1126 1137Right-handed alpha
Helix 50
AF5
A
1138 1146Right-handed alpha
Helix 51
AF6
A
1147 1200Right-handed alpha
Helix 52
AF7
A
1205 1217Right-handed alpha
Helix 53
AF8
A
1221 1237Right-handed alpha
Helix 54
AF9
A
1237 1248Right-handed alpha
Helix 55
AG1
A
1257 1261Right-handed 310
Helix 56
AG2
A
1313 1320Right-handed alpha
Helix 57
AG3
A
1341 1347Right-handed alpha
Helix 58
AG4
A
1363 1368Right-handed alpha
Helix 59
AG5
A
1374 1385Right-handed alpha
Helix 60
AG6
A
1387 1395Right-handed alpha
Helix 61
AG7
A
1397 1400Right-handed 310
Helix 62
AG8
A
1404 1408Right-handed 310
Helix 63
AG9
A
1411 1426Right-handed alpha
Helix 64
AH1
A
1435 1439Right-handed 310
Helix 65
AH2
A
1441 1455Right-handed alpha
Helix 66
AH3
A
1456 1459Right-handed 310
Helix 67
AH4
A
1467 1472Right-handed 310
Helix 68
AH5
A
1490 1497Right-handed alpha
Helix 69
AH6
A
1500 1509Right-handed alpha
Helix 70
AH7
A
1510 1515Right-handed alpha
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There are 7 sheets in PDB entry 9AY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 615first strand
Strand 2
A
681 690parallel
Strand 3
A
624 635anti-parallel
Strand 4
A
644 654anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
694 696first strand
Strand 2
A
773 777parallel
Strand 3
A
806 810parallel
Strand 4
A
658 662parallel
Strand 5
A
822 827parallel
Strand 6
A
830 835anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
705 706first strand
Strand 2
A
745 746anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1289 1292first strand
Strand 2
A
1272 1279anti-parallel
Strand 3
A
1295 1296anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1289 1292first strand
Strand 2
A
1272 1279anti-parallel
Strand 3
A
1327 1332anti-parallel
Strand 4
A
1335 1336anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1351 1352first strand
Strand 2
A
1430 1433parallel
Strand 3
A
1460 1464parallel
Strand 4
A
1301 1306parallel
Strand 5
A
1476 1481parallel
Strand 6
A
1484 1489anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1361 1362first strand
Strand 2
A
1402 1403anti-parallel
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