Analysis of interatomic Contacts of Structural Units in PDB entry:
9AY8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9AY8 entry

There are 2 chains in PDB entry 9AY8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 44	SER 697
B	TYR 44	PHE 681

There are 89 helices in PDB entry 9AY8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	280	294	Right-handed alpha
Helix 2	AA2	A	301	305	Right-handed 310
Helix 3	AA3	A	306	311	Right-handed 310
Helix 4	AA4	A	319	323	Right-handed 310
Helix 5	AA5	A	324	331	Right-handed alpha
Helix 6	AA6	A	331	339	Right-handed alpha
Helix 7	AA7	A	366	380	Right-handed alpha
Helix 8	AA8	A	397	403	Right-handed alpha
Helix 9	AA9	A	404	407	Right-handed 310
Helix 10	AB1	A	437	454	Right-handed alpha
Helix 11	AB2	A	473	477	Right-handed 310
Helix 12	AB3	A	482	487	Right-handed alpha
Helix 13	AB4	A	488	503	Right-handed alpha
Helix 14	AB5	A	518	525	Right-handed 310
Helix 15	AB6	A	535	551	Right-handed alpha
Helix 16	AB7	A	564	571	Right-handed alpha
Helix 17	AB8	A	582	600	Right-handed alpha
Helix 18	AB9	A	601	604	Right-handed 310
Helix 19	AC1	B	280	294	Right-handed alpha
Helix 20	AC2	B	301	305	Right-handed 310
Helix 21	AC3	B	306	311	Right-handed 310
Helix 22	AC4	B	319	323	Right-handed 310
Helix 23	AC5	B	324	331	Right-handed alpha
Helix 24	AC6	B	331	339	Right-handed alpha
Helix 25	AC7	B	366	380	Right-handed alpha
Helix 26	AC8	B	397	403	Right-handed alpha
Helix 27	AC9	B	404	407	Right-handed 310
Helix 28	AD1	B	437	454	Right-handed alpha
Helix 29	AD2	B	473	477	Right-handed 310
Helix 30	AD3	B	482	487	Right-handed alpha
Helix 31	AD4	B	488	503	Right-handed alpha
Helix 32	AD5	B	518	525	Right-handed 310
Helix 33	AD6	B	535	551	Right-handed alpha
Helix 34	AD7	B	564	571	Right-handed alpha
Helix 35	AD8	B	582	600	Right-handed alpha
Helix 36	AD9	B	601	604	Right-handed 310
Helix 37	AE1	C	280	294	Right-handed alpha
Helix 38	AE2	C	301	305	Right-handed 310
Helix 39	AE3	C	306	311	Right-handed 310
Helix 40	AE4	C	319	323	Right-handed 310
Helix 41	AE5	C	324	331	Right-handed alpha
Helix 42	AE6	C	331	339	Right-handed alpha
Helix 43	AE7	C	366	380	Right-handed alpha
Helix 44	AE8	C	397	403	Right-handed alpha
Helix 45	AE9	C	404	407	Right-handed 310
Helix 46	AF1	C	437	454	Right-handed alpha
Helix 47	AF2	C	473	477	Right-handed 310
Helix 48	AF3	C	482	487	Right-handed alpha
Helix 49	AF4	C	488	503	Right-handed alpha
Helix 50	AF5	C	518	525	Right-handed 310
Helix 51	AF6	C	535	551	Right-handed alpha
Helix 52	AF7	C	564	571	Right-handed alpha
Helix 53	AF8	C	582	600	Right-handed alpha
Helix 54	AF9	C	601	604	Right-handed 310
Helix 55	AG1	D	280	294	Right-handed alpha
Helix 56	AG2	D	301	305	Right-handed 310
Helix 57	AG3	D	306	311	Right-handed 310
Helix 58	AG4	D	319	323	Right-handed 310
Helix 59	AG5	D	324	331	Right-handed alpha
Helix 60	AG6	D	331	339	Right-handed alpha
Helix 61	AG7	D	366	380	Right-handed alpha
Helix 62	AG8	D	397	403	Right-handed alpha
Helix 63	AG9	D	404	407	Right-handed 310
Helix 64	AH1	D	437	454	Right-handed alpha
Helix 65	AH2	D	473	477	Right-handed 310
Helix 66	AH3	D	482	487	Right-handed alpha
Helix 67	AH4	D	488	503	Right-handed alpha
Helix 68	AH5	D	518	525	Right-handed 310
Helix 69	AH6	D	535	551	Right-handed alpha
Helix 70	AH7	D	564	571	Right-handed alpha
Helix 71	AH8	D	582	600	Right-handed alpha
Helix 72	AH9	D	601	604	Right-handed 310
Helix 73	AI1	E	280	294	Right-handed alpha
Helix 74	AI2	E	301	305	Right-handed 310
Helix 75	AI3	E	306	311	Right-handed 310
Helix 76	AI4	E	319	323	Right-handed 310
Helix 77	AI5	E	324	339	Right-handed alpha
Helix 78	AI6	E	366	380	Right-handed alpha
Helix 79	AI7	E	397	403	Right-handed alpha
Helix 80	AI8	E	404	407	Right-handed 310
Helix 81	AI9	E	437	454	Right-handed alpha
Helix 82	AJ1	E	473	477	Right-handed 310
Helix 83	AJ2	E	482	487	Right-handed alpha
Helix 84	AJ3	E	488	503	Right-handed alpha
Helix 85	AJ4	E	518	525	Right-handed 310
Helix 86	AJ5	E	535	551	Right-handed alpha
Helix 87	AJ6	E	564	571	Right-handed alpha
Helix 88	AJ7	E	582	600	Right-handed alpha
Helix 89	AJ8	E	601	604	Right-handed 310

There are 50 sheets in PDB entry 9AY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	51	56	anti-parallel
Strand 3	A	61	68	anti-parallel
Strand 4	A	71	74	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	51	56	anti-parallel
Strand 3	A	61	68	anti-parallel
Strand 4	A	79	80	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	90	first strand
Strand 2	A	84	86	anti-parallel
Strand 3	A	159	166	anti-parallel
Strand 4	A	250	257	anti-parallel
Strand 5	A	243	245	anti-parallel
Strand 6	A	203	204	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	107	first strand
Strand 2	A	110	121	anti-parallel
Strand 3	A	126	135	anti-parallel
Strand 4	A	141	149	anti-parallel
Strand 5	A	266	277	anti-parallel
Strand 6	A	225	231	anti-parallel
Strand 7	A	217	222	anti-parallel
Strand 8	A	173	178	anti-parallel
Strand 9	A	191	195	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	156	first strand
Strand 2	A	260	261	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	239	240	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	511	first strand
Strand 2	A	459	463	parallel
Strand 3	A	383	388	parallel
Strand 4	A	342	345	parallel
Strand 5	A	313	315	parallel
Strand 6	A	576	577	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	529	first strand
Strand 2	A	556	557	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	607	first strand
Strand 2	A	619	625	anti-parallel
Strand 3	A	628	634	anti-parallel
Strand 4	A	688	696	anti-parallel
Strand 5	A	658	663	anti-parallel
Strand 6	A	668	675	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	649	first strand
Strand 2	A	680	681	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	48	first strand
Strand 2	B	51	56	anti-parallel
Strand 3	B	61	68	anti-parallel
Strand 4	B	71	74	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	48	first strand
Strand 2	B	51	56	anti-parallel
Strand 3	B	61	68	anti-parallel
Strand 4	B	79	80	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	84	86	anti-parallel
Strand 3	B	159	166	anti-parallel
Strand 4	B	250	257	anti-parallel
Strand 5	B	243	245	anti-parallel
Strand 6	B	203	204	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	107	first strand
Strand 2	B	110	121	anti-parallel
Strand 3	B	126	135	anti-parallel
Strand 4	B	141	149	anti-parallel
Strand 5	B	266	277	anti-parallel
Strand 6	B	225	231	anti-parallel
Strand 7	B	217	222	anti-parallel
Strand 8	B	173	178	anti-parallel
Strand 9	B	191	195	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	260	261	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	239	240	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	511	first strand
Strand 2	B	459	463	parallel
Strand 3	B	383	388	parallel
Strand 4	B	342	345	parallel
Strand 5	B	313	315	parallel
Strand 6	B	576	577	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	529	first strand
Strand 2	B	556	557	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	605	607	first strand
Strand 2	B	619	625	anti-parallel
Strand 3	B	628	634	anti-parallel
Strand 4	B	688	695	anti-parallel
Strand 5	B	658	663	anti-parallel
Strand 6	B	668	675	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	648	649	first strand
Strand 2	B	680	681	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	48	first strand
Strand 2	C	51	56	anti-parallel
Strand 3	C	61	68	anti-parallel
Strand 4	C	71	74	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	48	first strand
Strand 2	C	51	56	anti-parallel
Strand 3	C	61	68	anti-parallel
Strand 4	C	79	80	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	90	first strand
Strand 2	C	84	86	anti-parallel
Strand 3	C	159	166	anti-parallel
Strand 4	C	250	257	anti-parallel
Strand 5	C	243	245	anti-parallel
Strand 6	C	203	204	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	107	first strand
Strand 2	C	110	121	anti-parallel
Strand 3	C	126	135	anti-parallel
Strand 4	C	141	149	anti-parallel
Strand 5	C	266	277	anti-parallel
Strand 6	C	225	231	anti-parallel
Strand 7	C	217	222	anti-parallel
Strand 8	C	173	178	anti-parallel
Strand 9	C	191	195	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	156	first strand
Strand 2	C	260	261	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	239	240	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	507	511	first strand
Strand 2	C	459	463	parallel
Strand 3	C	383	388	parallel
Strand 4	C	342	345	parallel
Strand 5	C	313	315	parallel
Strand 6	C	576	577	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	528	529	first strand
Strand 2	C	556	557	parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	605	607	first strand
Strand 2	C	619	625	anti-parallel
Strand 3	C	628	634	anti-parallel
Strand 4	C	688	696	anti-parallel
Strand 5	C	658	663	anti-parallel
Strand 6	C	668	675	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	648	649	first strand
Strand 2	C	680	681	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	48	first strand
Strand 2	D	51	56	anti-parallel
Strand 3	D	61	68	anti-parallel
Strand 4	D	71	74	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	48	first strand
Strand 2	D	51	56	anti-parallel
Strand 3	D	61	68	anti-parallel
Strand 4	D	79	80	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	90	first strand
Strand 2	D	84	86	anti-parallel
Strand 3	D	159	166	anti-parallel
Strand 4	D	250	257	anti-parallel
Strand 5	D	243	245	anti-parallel
Strand 6	D	203	204	anti-parallel

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There are 9 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	107	first strand
Strand 2	D	110	121	anti-parallel
Strand 3	D	127	135	anti-parallel
Strand 4	D	141	149	anti-parallel
Strand 5	D	266	277	anti-parallel
Strand 6	D	225	231	anti-parallel
Strand 7	D	217	222	anti-parallel
Strand 8	D	173	178	anti-parallel
Strand 9	D	191	195	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	156	first strand
Strand 2	D	260	261	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	239	240	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	507	511	first strand
Strand 2	D	459	463	parallel
Strand 3	D	383	388	parallel
Strand 4	D	342	345	parallel
Strand 5	D	313	315	parallel
Strand 6	D	576	577	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	528	529	first strand
Strand 2	D	556	557	parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	605	607	first strand
Strand 2	D	619	625	anti-parallel
Strand 3	D	628	634	anti-parallel
Strand 4	D	688	696	anti-parallel
Strand 5	D	658	663	anti-parallel
Strand 6	D	668	675	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	648	649	first strand
Strand 2	D	680	681	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	48	first strand
Strand 2	E	51	56	anti-parallel
Strand 3	E	61	68	anti-parallel
Strand 4	E	71	74	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	48	first strand
Strand 2	E	51	56	anti-parallel
Strand 3	E	61	68	anti-parallel
Strand 4	E	79	80	anti-parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	90	first strand
Strand 2	E	84	86	anti-parallel
Strand 3	E	159	166	anti-parallel
Strand 4	E	250	257	anti-parallel
Strand 5	E	243	245	anti-parallel
Strand 6	E	203	204	anti-parallel

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There are 9 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	107	first strand
Strand 2	E	110	121	anti-parallel
Strand 3	E	126	135	anti-parallel
Strand 4	E	141	149	anti-parallel
Strand 5	E	266	277	anti-parallel
Strand 6	E	225	231	anti-parallel
Strand 7	E	217	222	anti-parallel
Strand 8	E	173	178	anti-parallel
Strand 9	E	191	195	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	156	first strand
Strand 2	E	260	261	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	207	208	first strand
Strand 2	E	239	240	anti-parallel

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There are 6 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	507	511	first strand
Strand 2	E	459	463	parallel
Strand 3	E	383	388	parallel
Strand 4	E	342	345	parallel
Strand 5	E	313	315	parallel
Strand 6	E	576	577	parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	528	529	first strand
Strand 2	E	556	557	parallel

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There are 6 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	605	607	first strand
Strand 2	E	619	625	anti-parallel
Strand 3	E	628	634	anti-parallel
Strand 4	E	688	695	anti-parallel
Strand 5	E	658	663	anti-parallel
Strand 6	E	668	675	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	648	649	first strand
Strand 2	E	680	681	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9AY8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9AY8