Analysis of interatomic Contacts of Structural Units in PDB entry:
9AYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9AYG entry

There is 1 chain in PDB entry 9AYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 96SER 1866
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 9AYG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 119Right-handed alpha
Helix 2
AA2
A
121 126Right-handed alpha
Helix 3
AA3
A
130 159Right-handed alpha
Helix 4
AA4
A
170 189Right-handed alpha
Helix 5
AA5
A
194 199Right-handed alpha
Helix 6
AA6
A
200 207Right-handed 310
Helix 7
AA7
A
208 213Right-handed alpha
Helix 8
AA8
A
213 227Right-handed alpha
Helix 9
AA9
A
230 253Right-handed alpha
Helix 10
AB1
A
254 256Right-handed 310
Helix 11
AB2
A
263 270Right-handed alpha
Helix 12
AB3
A
301 305Right-handed 310
Helix 13
AB4
A
339 344Right-handed 310
Helix 14
AB5
A
353 358Right-handed alpha
Helix 15
AB6
A
363 376Right-handed alpha
Helix 16
AB7
A
379 391Right-handed alpha
Helix 17
AB8
A
392 394Right-handed 310
Helix 18
AB9
A
395 406Right-handed alpha
Helix 19
AC1
A
408 425Right-handed alpha
Helix 20
AC2
A
792 810Right-handed alpha
Helix 21
AC3
A
811 813Right-handed 310
Helix 22
AC4
A
818 854Right-handed alpha
Helix 23
AC5
A
855 874Right-handed alpha
Helix 24
AC6
A
882 886Right-handed alpha
Helix 25
AC7
A
887 892Right-handed 310
Helix 26
AC8
A
893 898Right-handed alpha
Helix 27
AC9
A
898 938Right-handed alpha
Helix 28
AD1
A
959 973Right-handed alpha
Helix 29
AD2
A
975 987Right-handed alpha
Helix 30
AD3
A
988 990Right-handed 310
Helix 31
AD4
A
991 1019Right-handed alpha
Helix 32
AD5
A
1283 1292Right-handed alpha
Helix 33
AD6
A
1295 1314Right-handed alpha
Helix 34
AD7
A
1322 1351Right-handed alpha
Helix 35
AD8
A
1358 1361Right-handed 310
Helix 36
AD9
A
1362 1384Right-handed alpha
Helix 37
AE1
A
1391 1402Right-handed alpha
Helix 38
AE2
A
1403 1407Right-handed 310
Helix 39
AE3
A
1408 1413Right-handed alpha
Helix 40
AE4
A
1413 1427Right-handed alpha
Helix 41
AE5
A
1430 1453Right-handed alpha
Helix 42
AE6
A
1469 1476Right-handed alpha
Helix 43
AE7
A
1489 1503Right-handed alpha
Helix 44
AE8
A
1505 1516Right-handed alpha
Helix 45
AE9
A
1528 1530Right-handed 310
Helix 46
AF1
A
1531 1564Right-handed alpha
Helix 47
AF2
A
1605 1616Right-handed alpha
Helix 48
AF3
A
1617 1636Right-handed alpha
Helix 49
AF4
A
1642 1672Right-handed alpha
Helix 50
AF5
A
1672 1679Right-handed alpha
Helix 51
AF6
A
1679 1704Right-handed alpha
Helix 52
AF7
A
1710 1721Right-handed alpha
Helix 53
AF8
A
1722 1724Right-handed 310
Helix 54
AF9
A
1725 1730Right-handed alpha
Helix 55
AG1
A
1732 1744Right-handed alpha
Helix 56
AG2
A
1745 1772Right-handed alpha
Helix 57
AG3
A
1793 1807Right-handed alpha
Helix 58
AG4
A
1809 1819Right-handed alpha
Helix 59
AG5
A
1831 1866Right-handed alpha
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There are 2 sheets in PDB entry 9AYG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 261first strand
Strand 2
A
346 349anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1457 1460first strand
Strand 2
A
1479 1482anti-parallel
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