Analysis of interatomic Contacts of Structural Units in PDB entry:
9AZJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9AZJ entry

There are 9 chains in PDB entry 9AZJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 259LEU 343
B
 LEU 260LYS 342
C
 GLN 265GLN 337
D
 GLN 269GLU 339
E
 ARG 353ALA 379
F
 MET 1LEU 71
G
 ARG 353ALA 379
S
 MET 1CYS 76
Z
 MET 1CYS 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9AZJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
260 342Right-handed alpha
Helix 2
AA2
B
261 338Right-handed alpha
Helix 3
AA3
C
266 296Right-handed alpha
Helix 4
AA4
C
297 336Right-handed alpha
Helix 5
AA5
D
270 328Right-handed alpha
Helix 6
AA6
D
329 336Right-handed alpha
Helix 7
AA7
F
22 35Right-handed alpha
Helix 8
AA8
F
37 41Right-handed 310
Helix 9
AA9
F
55 60Right-handed 310
Helix 10
AB1
S
22 35Right-handed alpha
Helix 11
AB2
Z
22 35Right-handed alpha
Helix 12
AB3
Z
37 41Right-handed 310
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There are 5 sheets in PDB entry 9AZJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
354 355first strand
Strand 2
E
362 363anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 16first strand
Strand 2
F
2 6anti-parallel
Strand 3
F
66 70parallel
Strand 4
F
42 45anti-parallel
Strand 5
F
48 49anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
354 355first strand
Strand 2
G
362 363anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
12 16first strand
Strand 2
S
2 7anti-parallel
Strand 3
S
66 71parallel
Strand 4
S
41 45anti-parallel
Strand 5
S
48 49anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
12 16first strand
Strand 2
Z
2 6anti-parallel
Strand 3
Z
66 70parallel
Strand 4
Z
42 45anti-parallel
Strand 5
Z
48 49anti-parallel
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