Analysis of interatomic Contacts of Structural Units in PDB entry:
9AZO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9AZO entry

There are 5 chains in PDB entry 9AZO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	ASN 317
B	LYS 3	ASN 317
C	LYS 3	ASN 317
D	LYS 3	ASN 317
E	LYS 3	VAL 31

There are 66 helices in PDB entry 9AZO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	24	Right-handed alpha
Helix 2	AA2	A	38	50	Right-handed alpha
Helix 3	AA3	A	57	63	Right-handed alpha
Helix 4	AA4	A	75	77	Right-handed 310
Helix 5	AA5	A	78	89	Right-handed alpha
Helix 6	AA6	A	102	117	Right-handed alpha
Helix 7	AA7	A	124	128	Right-handed 310
Helix 8	AA8	A	129	141	Right-handed alpha
Helix 9	AA9	A	177	191	Right-handed alpha
Helix 10	AB1	A	276	292	Right-handed alpha
Helix 11	AB2	A	298	317	Right-handed alpha
Helix 12	AB3	B	13	24	Right-handed alpha
Helix 13	AB4	B	38	50	Right-handed alpha
Helix 14	AB5	B	57	63	Right-handed alpha
Helix 15	AB6	B	75	77	Right-handed 310
Helix 16	AB7	B	78	89	Right-handed alpha
Helix 17	AB8	B	102	117	Right-handed alpha
Helix 18	AB9	B	124	128	Right-handed 310
Helix 19	AC1	B	129	141	Right-handed alpha
Helix 20	AC2	B	173	191	Right-handed alpha
Helix 21	AC3	B	276	292	Right-handed alpha
Helix 22	AC4	B	298	317	Right-handed alpha
Helix 23	AC5	C	13	24	Right-handed alpha
Helix 24	AC6	C	38	50	Right-handed alpha
Helix 25	AC7	C	57	63	Right-handed alpha
Helix 26	AC8	C	75	77	Right-handed 310
Helix 27	AC9	C	78	89	Right-handed alpha
Helix 28	AD1	C	102	117	Right-handed alpha
Helix 29	AD2	C	124	128	Right-handed 310
Helix 30	AD3	C	129	141	Right-handed alpha
Helix 31	AD4	C	177	191	Right-handed alpha
Helix 32	AD5	C	276	292	Right-handed alpha
Helix 33	AD6	C	298	317	Right-handed alpha
Helix 34	AD7	D	13	24	Right-handed alpha
Helix 35	AD8	D	38	50	Right-handed alpha
Helix 36	AD9	D	57	63	Right-handed alpha
Helix 37	AE1	D	75	77	Right-handed 310
Helix 38	AE2	D	78	89	Right-handed alpha
Helix 39	AE3	D	102	117	Right-handed alpha
Helix 40	AE4	D	124	128	Right-handed 310
Helix 41	AE5	D	129	141	Right-handed alpha
Helix 42	AE6	D	177	191	Right-handed alpha
Helix 43	AE7	D	276	292	Right-handed alpha
Helix 44	AE8	D	298	317	Right-handed alpha
Helix 45	AE9	E	13	24	Right-handed alpha
Helix 46	AF1	E	38	50	Right-handed alpha
Helix 47	AF2	E	57	63	Right-handed alpha
Helix 48	AF3	E	75	77	Right-handed 310
Helix 49	AF4	E	78	89	Right-handed alpha
Helix 50	AF5	E	102	117	Right-handed alpha
Helix 51	AF6	E	124	128	Right-handed 310
Helix 52	AF7	E	129	141	Right-handed alpha
Helix 53	AF8	E	177	191	Right-handed alpha
Helix 54	AF9	E	276	292	Right-handed alpha
Helix 55	AG1	E	298	317	Right-handed alpha
Helix 56	AG2	F	13	24	Right-handed alpha
Helix 57	AG3	F	38	50	Right-handed alpha
Helix 58	AG4	F	57	63	Right-handed alpha
Helix 59	AG5	F	75	77	Right-handed 310
Helix 60	AG6	F	78	89	Right-handed alpha
Helix 61	AG7	F	102	117	Right-handed alpha
Helix 62	AG8	F	124	128	Right-handed 310
Helix 63	AG9	F	129	141	Right-handed alpha
Helix 64	AH1	F	173	191	Right-handed alpha
Helix 65	AH2	F	276	292	Right-handed alpha
Helix 66	AH3	F	298	317	Right-handed alpha

There are 12 sheets in PDB entry 9AZO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	29	35	parallel
Strand 3	A	5	10	parallel
Strand 4	A	69	72	parallel
Strand 5	A	92	96	parallel
Strand 6	A	120	123	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	201	first strand
Strand 2	A	213	220	anti-parallel
Strand 3	A	225	231	anti-parallel
Strand 4	A	146	154	parallel
Strand 5	A	239	246	anti-parallel
Strand 6	A	250	254	anti-parallel
Strand 7	A	257	260	anti-parallel
Strand 8	A	265	266	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	29	35	parallel
Strand 3	B	5	10	parallel
Strand 4	B	69	72	parallel
Strand 5	B	92	96	parallel
Strand 6	B	120	123	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	201	first strand
Strand 2	B	213	220	anti-parallel
Strand 3	B	225	231	anti-parallel
Strand 4	B	146	154	parallel
Strand 5	B	239	246	anti-parallel
Strand 6	B	249	254	anti-parallel
Strand 7	B	257	260	anti-parallel
Strand 8	B	265	266	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	29	35	parallel
Strand 3	C	5	10	parallel
Strand 4	C	69	72	parallel
Strand 5	C	92	96	parallel
Strand 6	C	120	123	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	201	first strand
Strand 2	C	213	220	anti-parallel
Strand 3	C	225	231	anti-parallel
Strand 4	C	146	154	parallel
Strand 5	C	239	246	anti-parallel
Strand 6	C	249	254	anti-parallel
Strand 7	C	257	260	anti-parallel
Strand 8	C	265	266	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	29	35	parallel
Strand 3	D	5	10	parallel
Strand 4	D	69	72	parallel
Strand 5	D	92	96	parallel
Strand 6	D	120	123	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	201	first strand
Strand 2	D	213	220	anti-parallel
Strand 3	D	225	231	anti-parallel
Strand 4	D	146	154	parallel
Strand 5	D	239	246	anti-parallel
Strand 6	D	249	254	anti-parallel
Strand 7	D	257	260	anti-parallel
Strand 8	D	265	266	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	29	35	parallel
Strand 3	E	5	10	parallel
Strand 4	E	69	72	parallel
Strand 5	E	92	96	parallel
Strand 6	E	120	123	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	201	first strand
Strand 2	E	213	220	anti-parallel
Strand 3	E	225	231	anti-parallel
Strand 4	E	146	154	parallel
Strand 5	E	239	246	anti-parallel
Strand 6	E	249	254	anti-parallel
Strand 7	E	257	260	anti-parallel
Strand 8	E	265	266	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	55	first strand
Strand 2	F	29	35	parallel
Strand 3	F	5	10	parallel
Strand 4	F	69	72	parallel
Strand 5	F	92	96	parallel
Strand 6	F	120	123	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	194	201	first strand
Strand 2	F	213	220	anti-parallel
Strand 3	F	225	231	anti-parallel
Strand 4	F	146	154	parallel
Strand 5	F	239	246	anti-parallel
Strand 6	F	249	254	anti-parallel
Strand 7	F	257	260	anti-parallel
Strand 8	F	265	266	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9AZO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9AZO