Analysis of interatomic Contacts of Structural Units in PDB entry:
9B05

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B05 entry

There are 8 chains in PDB entry 9B05 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	GLU 359
B	SER 3	GLU 359
C	SER 3	GLU 359
D	SER 3	GLU 359
E	SER 3	GLU 359
F	SER 3	GLU 359
G	SER 3	GLU 359
H	SER 3	GLU 359

There are128 helices in PDB entry 9B05. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	15	Right-handed 310
Helix 2	AA2	A	23	29	Right-handed alpha
Helix 3	AA3	A	30	38	Right-handed alpha
Helix 4	AA4	A	47	58	Right-handed alpha
Helix 5	AA5	A	75	80	Right-handed alpha
Helix 6	AA6	A	80	92	Right-handed alpha
Helix 7	AA7	A	107	111	Right-handed 310
Helix 8	AA8	A	142	158	Right-handed alpha
Helix 9	AA9	A	159	160	Right-handed 310
Helix 10	AB1	A	161	164	Right-handed 310
Helix 11	AB2	A	175	185	Right-handed alpha
Helix 12	AB3	A	194	201	Right-handed alpha
Helix 13	AB4	A	240	262	Right-handed alpha
Helix 14	AB5	A	278	282	Right-handed 310
Helix 15	AB6	A	301	310	Right-handed alpha
Helix 16	AB7	A	340	357	Right-handed alpha
Helix 17	AB8	B	10	15	Right-handed 310
Helix 18	AB9	B	23	29	Right-handed alpha
Helix 19	AC1	B	30	38	Right-handed alpha
Helix 20	AC2	B	47	58	Right-handed alpha
Helix 21	AC3	B	75	80	Right-handed alpha
Helix 22	AC4	B	80	92	Right-handed alpha
Helix 23	AC5	B	107	111	Right-handed 310
Helix 24	AC6	B	142	159	Right-handed alpha
Helix 25	AC7	B	160	164	Right-handed 310
Helix 26	AC8	B	175	185	Right-handed alpha
Helix 27	AC9	B	194	199	Right-handed alpha
Helix 28	AD1	B	240	262	Right-handed alpha
Helix 29	AD2	B	278	282	Right-handed 310
Helix 30	AD3	B	302	310	Right-handed alpha
Helix 31	AD4	B	340	357	Right-handed alpha
Helix 32	AD5	C	10	15	Right-handed 310
Helix 33	AD6	C	23	29	Right-handed alpha
Helix 34	AD7	C	30	38	Right-handed alpha
Helix 35	AD8	C	47	58	Right-handed alpha
Helix 36	AD9	C	75	80	Right-handed alpha
Helix 37	AE1	C	80	92	Right-handed alpha
Helix 38	AE2	C	107	111	Right-handed 310
Helix 39	AE3	C	142	158	Right-handed alpha
Helix 40	AE4	C	159	160	Right-handed 310
Helix 41	AE5	C	161	164	Right-handed 310
Helix 42	AE6	C	175	185	Right-handed alpha
Helix 43	AE7	C	194	199	Right-handed alpha
Helix 44	AE8	C	240	262	Right-handed alpha
Helix 45	AE9	C	278	282	Right-handed 310
Helix 46	AF1	C	296	300	Right-handed alpha
Helix 47	AF2	C	302	310	Right-handed alpha
Helix 48	AF3	C	340	357	Right-handed alpha
Helix 49	AF4	D	10	15	Right-handed 310
Helix 50	AF5	D	23	29	Right-handed alpha
Helix 51	AF6	D	30	38	Right-handed alpha
Helix 52	AF7	D	47	58	Right-handed alpha
Helix 53	AF8	D	75	80	Right-handed alpha
Helix 54	AF9	D	80	92	Right-handed alpha
Helix 55	AG1	D	107	111	Right-handed 310
Helix 56	AG2	D	142	158	Right-handed alpha
Helix 57	AG3	D	159	160	Right-handed 310
Helix 58	AG4	D	161	164	Right-handed 310
Helix 59	AG5	D	172	174	Right-handed 310
Helix 60	AG6	D	175	185	Right-handed alpha
Helix 61	AG7	D	194	199	Right-handed alpha
Helix 62	AG8	D	240	262	Right-handed alpha
Helix 63	AG9	D	278	282	Right-handed 310
Helix 64	AH1	D	301	310	Right-handed alpha
Helix 65	AH2	D	340	357	Right-handed alpha
Helix 66	AH3	E	10	15	Right-handed 310
Helix 67	AH4	E	23	29	Right-handed alpha
Helix 68	AH5	E	30	38	Right-handed alpha
Helix 69	AH6	E	47	58	Right-handed alpha
Helix 70	AH7	E	75	80	Right-handed alpha
Helix 71	AH8	E	80	92	Right-handed alpha
Helix 72	AH9	E	107	111	Right-handed 310
Helix 73	AI1	E	142	158	Right-handed alpha
Helix 74	AI2	E	159	160	Right-handed 310
Helix 75	AI3	E	161	164	Right-handed 310
Helix 76	AI4	E	175	185	Right-handed alpha
Helix 77	AI5	E	194	199	Right-handed alpha
Helix 78	AI6	E	240	262	Right-handed alpha
Helix 79	AI7	E	278	282	Right-handed 310
Helix 80	AI8	E	301	310	Right-handed alpha
Helix 81	AI9	E	340	359	Right-handed alpha
Helix 82	AJ1	F	10	15	Right-handed 310
Helix 83	AJ2	F	23	29	Right-handed alpha
Helix 84	AJ3	F	30	38	Right-handed alpha
Helix 85	AJ4	F	47	58	Right-handed alpha
Helix 86	AJ5	F	75	80	Right-handed alpha
Helix 87	AJ6	F	80	92	Right-handed alpha
Helix 88	AJ7	F	107	111	Right-handed 310
Helix 89	AJ8	F	142	159	Right-handed alpha
Helix 90	AJ9	F	160	164	Right-handed 310
Helix 91	AK1	F	175	185	Right-handed alpha
Helix 92	AK2	F	194	199	Right-handed alpha
Helix 93	AK3	F	240	262	Right-handed alpha
Helix 94	AK4	F	278	282	Right-handed 310
Helix 95	AK5	F	301	310	Right-handed alpha
Helix 96	AK6	F	340	359	Right-handed alpha
Helix 97	AK7	G	10	15	Right-handed 310
Helix 98	AK8	G	23	29	Right-handed alpha
Helix 99	AK9	G	30	38	Right-handed alpha
Helix 100	AL1	G	47	58	Right-handed alpha
Helix 101	AL2	G	75	80	Right-handed alpha
Helix 102	AL3	G	80	92	Right-handed alpha
Helix 103	AL4	G	107	111	Right-handed 310
Helix 104	AL5	G	142	159	Right-handed alpha
Helix 105	AL6	G	160	164	Right-handed 310
Helix 106	AL7	G	172	174	Right-handed 310
Helix 107	AL8	G	175	185	Right-handed alpha
Helix 108	AL9	G	194	199	Right-handed alpha
Helix 109	AM1	G	240	262	Right-handed alpha
Helix 110	AM2	G	278	282	Right-handed 310
Helix 111	AM3	G	302	310	Right-handed alpha
Helix 112	AM4	G	340	357	Right-handed alpha
Helix 113	AM5	H	10	15	Right-handed 310
Helix 114	AM6	H	23	29	Right-handed alpha
Helix 115	AM7	H	30	38	Right-handed alpha
Helix 116	AM8	H	47	58	Right-handed alpha
Helix 117	AM9	H	75	80	Right-handed alpha
Helix 118	AN1	H	80	92	Right-handed alpha
Helix 119	AN2	H	107	111	Right-handed 310
Helix 120	AN3	H	142	159	Right-handed alpha
Helix 121	AN4	H	160	164	Right-handed 310
Helix 122	AN5	H	172	174	Right-handed 310
Helix 123	AN6	H	175	185	Right-handed alpha
Helix 124	AN7	H	194	199	Right-handed alpha
Helix 125	AN8	H	240	262	Right-handed alpha
Helix 126	AN9	H	278	282	Right-handed 310
Helix 127	AO1	H	302	310	Right-handed alpha
Helix 128	AO2	H	340	357	Right-handed alpha

There are 24 sheets in PDB entry 9B05. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	170	first strand
Strand 2	A	211	215	anti-parallel
Strand 3	A	220	224	anti-parallel
Strand 4	A	230	237	anti-parallel
Strand 5	A	123	127	anti-parallel
Strand 6	A	287	290	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	269	first strand
Strand 2	A	273	274	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	314	first strand
Strand 2	A	331	333	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	170	first strand
Strand 2	B	211	215	anti-parallel
Strand 3	B	220	224	anti-parallel
Strand 4	B	230	237	anti-parallel
Strand 5	B	123	127	anti-parallel
Strand 6	B	287	290	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	269	first strand
Strand 2	B	273	274	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	314	first strand
Strand 2	B	331	333	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	170	first strand
Strand 2	C	211	215	anti-parallel
Strand 3	C	220	224	anti-parallel
Strand 4	C	230	237	anti-parallel
Strand 5	C	123	127	anti-parallel
Strand 6	C	287	290	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	269	first strand
Strand 2	C	273	274	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	314	first strand
Strand 2	C	331	333	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	170	first strand
Strand 2	D	211	215	anti-parallel
Strand 3	D	220	224	anti-parallel
Strand 4	D	230	237	anti-parallel
Strand 5	D	123	127	anti-parallel
Strand 6	D	287	290	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	269	first strand
Strand 2	D	273	274	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	314	first strand
Strand 2	D	331	333	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	170	first strand
Strand 2	E	211	215	anti-parallel
Strand 3	E	220	224	anti-parallel
Strand 4	E	230	237	anti-parallel
Strand 5	E	123	127	anti-parallel
Strand 6	E	287	290	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	268	269	first strand
Strand 2	E	273	274	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	312	314	first strand
Strand 2	E	331	333	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	166	170	first strand
Strand 2	F	211	215	anti-parallel
Strand 3	F	220	224	anti-parallel
Strand 4	F	230	237	anti-parallel
Strand 5	F	123	127	anti-parallel
Strand 6	F	287	290	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	268	269	first strand
Strand 2	F	273	274	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	312	313	first strand
Strand 2	F	332	333	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	166	170	first strand
Strand 2	G	211	215	anti-parallel
Strand 3	G	220	224	anti-parallel
Strand 4	G	230	237	anti-parallel
Strand 5	G	123	127	anti-parallel
Strand 6	G	287	290	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	268	269	first strand
Strand 2	G	273	274	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	312	313	first strand
Strand 2	G	332	333	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	170	first strand
Strand 2	H	211	215	anti-parallel
Strand 3	H	220	224	anti-parallel
Strand 4	H	230	237	anti-parallel
Strand 5	H	123	127	anti-parallel
Strand 6	H	287	290	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	268	269	first strand
Strand 2	H	273	274	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	312	314	first strand
Strand 2	H	331	333	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B05

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B05