Analysis of interatomic Contacts of Structural Units in PDB entry:
9B0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9B0B entry

There are 6 chains in PDB entry 9B0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 420ASP 504
B
 ASP 419LYS 501
G
 ARG 351ALA 379
C
 ARG 420GLU 502
D
 GLY 417GLU 502
E
 ARG 351ALA 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 9B0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
420 469Right-handed alpha
Helix 2
AA2
A
469 503Right-handed alpha
Helix 3
AA3
B
420 501Right-handed alpha
Helix 4
AA4
C
421 502Right-handed alpha
Helix 5
AA5
D
420 459Right-handed alpha
Helix 6
AA6
D
460 502Right-handed alpha
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There are 2 sheets in PDB entry 9B0B. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
354 355first strand
Strand 2
G
362 363anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
354 355first strand
Strand 2
E
362 363anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il