Analysis of interatomic Contacts of Structural Units in PDB entry:
9B0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9B0C entry

There is 1 chain in PDB entry 9B0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9B0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
40 45Right-handed alpha
Helix 3
AA3
A
52 66Right-handed alpha
Helix 4
AA4
A
72 86Right-handed alpha
Helix 5
AA5
A
98 115Right-handed alpha
Helix 6
AA6
A
128 132Right-handed 310
Helix 7
AA7
A
150 162Right-handed alpha
Helix 8
AA8
A
178 192Right-handed alpha
Helix 9
AA9
A
211 216Right-handed alpha
Helix 10
AB1
A
226 230Right-handed 310
Helix 11
AB2
A
241 246Right-handed alpha
Helix 12
AB3
A
247 249Right-handed 310
Helix 13
AB4
A
258 275Right-handed alpha
Helix 14
AB5
A
276 300Right-handed alpha
Helix 15
AB6
A
317 331Right-handed alpha
Helix 16
AB7
A
349 370Right-handed alpha
Helix 17
AB8
A
371 374Right-handed 310
Helix 18
AB9
A
379 392Right-handed alpha
Helix 19
AC1
A
402 414Right-handed alpha
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There are 3 sheets in PDB entry 9B0C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
27 30anti-parallel
Strand 3
A
35 38anti-parallel
Strand 4
A
333 334parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
236 240anti-parallel
Strand 3
A
222 225anti-parallel
Strand 4
A
196 199parallel
Strand 5
A
165 170parallel
Strand 6
A
118 122parallel
Strand 7
A
144 146parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 308first strand
Strand 2
A
311 315anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il