Analysis of interatomic Contacts of Structural Units in PDB entry:
9B0L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B0L entry

There are 5 chains in PDB entry 9B0L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	G -9	C 1
P	PRO 53	LYS 518
D	C 1	A 4
A	A -13	C 9
C	A -205	U 13

There are 14 helices in PDB entry 9B0L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	59	63	Right-handed 310
Helix 2	AA2	P	109	122	Right-handed alpha
Helix 3	AA3	P	142	171	Right-handed alpha
Helix 4	AA4	P	180	188	Right-handed alpha
Helix 5	AA5	P	189	197	Right-handed alpha
Helix 6	AA6	P	197	206	Right-handed alpha
Helix 7	AA7	P	213	237	Right-handed alpha
Helix 8	AA8	P	260	262	Right-handed 310
Helix 9	AA9	P	344	369	Right-handed alpha
Helix 10	AB1	P	373	410	Right-handed alpha
Helix 11	AB2	P	419	425	Right-handed alpha
Helix 12	AB3	P	432	443	Right-handed alpha
Helix 13	AB4	P	443	458	Right-handed alpha
Helix 14	AB5	P	500	514	Right-handed alpha

There are 6 sheets in PDB entry 9B0L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	77	79	first strand
Strand 2	P	87	91	anti-parallel
Strand 3	P	338	342	anti-parallel
Strand 4	P	331	335	anti-parallel
Strand 5	P	320	325	anti-parallel
Strand 6	P	412	416	parallel
Strand 7	P	461	465	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	101	105	first strand
Strand 2	P	312	316	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	132	133	first strand
Strand 2	P	307	308	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	136	139	first strand
Strand 2	P	300	304	anti-parallel
Strand 3	P	290	295	anti-parallel
Strand 4	P	254	259	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	264	265	first strand
Strand 2	P	268	269	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	488	490	first strand
Strand 2	P	497	499	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B0L

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B0L