Analysis of interatomic Contacts of Structural Units in PDB entry:
9B0Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B0Z entry

There are 7 chains in PDB entry 9B0Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 419	ALA 505
F	ARG 353	ALA 379
C	MET 1	GLY 152
D	MET 1	LEU 149
A	PRO 418	PHE 506
E	ARG 353	ALA 379
G	MET 1	ARG 72

There are 14 helices in PDB entry 9B0Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	419	504	Right-handed alpha
Helix 2	AA2	C	22	35	Right-handed alpha
Helix 3	AA3	C	37	39	Right-handed 310
Helix 4	AA4	C	56	60	Right-handed 310
Helix 5	AA5	C	98	111	Right-handed alpha
Helix 6	AA6	C	113	115	Right-handed 310
Helix 7	AA7	D	22	35	Right-handed alpha
Helix 8	AA8	D	37	39	Right-handed 310
Helix 9	AA9	D	56	60	Right-handed 310
Helix 10	AB1	D	98	111	Right-handed alpha
Helix 11	AB2	D	113	115	Right-handed 310
Helix 12	AB3	A	419	506	Right-handed alpha
Helix 13	AB4	G	22	35	Right-handed alpha
Helix 14	AB5	G	37	39	Right-handed 310

There are 7 sheets in PDB entry 9B0Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	355	first strand
Strand 2	F	362	363	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	2	7	anti-parallel
Strand 3	C	66	71	parallel
Strand 4	C	41	45	anti-parallel
Strand 5	C	48	49	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	77	82	anti-parallel
Strand 3	C	142	147	parallel
Strand 4	C	117	121	anti-parallel
Strand 5	C	124	125	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	2	7	anti-parallel
Strand 3	D	66	71	parallel
Strand 4	D	41	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	92	first strand
Strand 2	D	78	83	anti-parallel
Strand 3	D	141	147	parallel
Strand 4	D	117	121	anti-parallel
Strand 5	D	124	125	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	355	first strand
Strand 2	E	362	363	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	16	first strand
Strand 2	G	2	7	anti-parallel
Strand 3	G	66	71	parallel
Strand 4	G	41	44	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B0Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B0Z