Analysis of interatomic Contacts of Structural Units in PDB entry:
9B12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9B12 entry

There are 10 chains in PDB entry 9B12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ASP 419GLU 507
D
 ARG 420GLU 507
E
 PRO 418ALA 505
F
 PRO 418ALA 505
A
 MET 1ARG 150
B
 MET 1ARG 150
G
 ARG 351ALA 379
H
 ARG 351ALA 379
I
 ARG 351ALA 379
J
 ARG 351ALA 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9B12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
419 505Right-handed alpha
Helix 2
AA2
D
421 507Right-handed alpha
Helix 3
AA3
E
419 459Right-handed alpha
Helix 4
AA4
E
459 505Right-handed alpha
Helix 5
AA5
F
419 505Right-handed alpha
Helix 6
AA6
A
22 35Right-handed alpha
Helix 7
AA7
A
37 39Right-handed 310
Helix 8
AA8
A
98 111Right-handed alpha
Helix 9
AA9
A
113 115Right-handed 310
Helix 10
AB1
A
131 136Right-handed alpha
Helix 11
AB2
B
22 30Right-handed alpha
Helix 12
AB3
B
30 35Right-handed alpha
Helix 13
AB4
B
37 39Right-handed 310
Helix 14
AB5
B
98 111Right-handed alpha
Helix 15
AB6
B
113 115Right-handed 310
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There are 8 sheets in PDB entry 9B12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
66 71parallel
Strand 3
A
41 44anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 92first strand
Strand 2
A
78 83anti-parallel
Strand 3
A
142 147parallel
Strand 4
A
117 121anti-parallel
Strand 5
A
124 125anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
66 71parallel
Strand 3
B
41 43anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 92first strand
Strand 2
B
78 83anti-parallel
Strand 3
B
142 147parallel
Strand 4
B
117 121anti-parallel
Strand 5
B
124 125anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
354 355first strand
Strand 2
G
362 363anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
354 355first strand
Strand 2
H
362 363anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
354 355first strand
Strand 2
I
362 363anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
354 355first strand
Strand 2
J
362 363anti-parallel
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