Analysis of interatomic Contacts of Structural Units in PDB entry:
9B1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9B1R entry

There is 1 chain in PDB entry 9B1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 21ALA 465
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9B1R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
72 77Right-handed 310
Helix 3
AA3
A
99 111Right-handed alpha
Helix 4
AA4
A
139 144Right-handed 310
Helix 5
AA5
A
152 166Right-handed alpha
Helix 6
AA6
A
181 185Right-handed 310
Helix 7
AA7
A
199 222Right-handed alpha
Helix 8
AA8
A
237 241Right-handed 310
Helix 9
AA9
A
243 249Right-handed alpha
Helix 10
AB1
A
264 268Right-handed 310
Helix 11
AB2
A
270 291Right-handed alpha
Helix 12
AB3
A
295 308Right-handed alpha
Helix 13
AB4
A
316 328Right-handed alpha
Helix 14
AB5
A
330 339Right-handed alpha
Helix 15
AB6
A
347 358Right-handed alpha
Helix 16
AB7
A
384 394Right-handed alpha
Helix 17
AB8
A
402 406Right-handed 310
Helix 18
AB9
A
413 422Right-handed 310
Helix 19
AC1
A
426 429Right-handed 310
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There are 7 sheets in PDB entry 9B1R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
28 30anti-parallel
Strand 3
A
170 175anti-parallel
Strand 4
A
54 61anti-parallel
Strand 5
A
89 94parallel
Strand 6
A
114 118parallel
Strand 7
A
148 150parallel
Strand 8
A
43 44anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 230first strand
Strand 2
A
186 191parallel
Strand 3
A
371 374anti-parallel
Strand 4
A
378 379anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
256 257anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
A
430 431anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 436first strand
Strand 2
A
439 442anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 447first strand
Strand 2
A
450 451anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 454first strand
Strand 2
A
460 461anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il