Analysis of interatomic Contacts of Structural Units in PDB entry:
9B29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9B29 entry

There are 4 chains in PDB entry 9B29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 138LYS 1245
B
 THR 138LYS 1245
C
 THR 138LYS 1245
D
 THR 138LYS 1245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are160 helices in PDB entry 9B29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
165 175Right-handed alpha
Helix 2
AA2
A
204 217Right-handed alpha
Helix 3
AA3
A
230 239Right-handed alpha
Helix 4
AA4
A
309 322Right-handed alpha
Helix 5
AA5
A
344 356Right-handed alpha
Helix 6
AA6
A
368 379Right-handed alpha
Helix 7
AA7
A
391 400Right-handed alpha
Helix 8
AA8
A
409 424Right-handed alpha
Helix 9
AA9
A
441 453Right-handed alpha
Helix 10
AB1
A
456 467Right-handed alpha
Helix 11
AB2
A
468 477Right-handed alpha
Helix 12
AB3
A
486 498Right-handed alpha
Helix 13
AB4
A
500 511Right-handed alpha
Helix 14
AB5
A
513 518Right-handed alpha
Helix 15
AB6
A
519 529Right-handed alpha
Helix 16
AB7
A
536 544Right-handed alpha
Helix 17
AB8
A
556 568Right-handed alpha
Helix 18
AB9
A
636 648Right-handed alpha
Helix 19
AC1
A
652 661Right-handed alpha
Helix 20
AC2
A
663 680Right-handed alpha
Helix 21
AC3
A
696 717Right-handed alpha
Helix 22
AC4
A
717 726Right-handed alpha
Helix 23
AC5
A
736 745Right-handed alpha
Helix 24
AC6
A
752 764Right-handed alpha
Helix 25
AC7
A
862 870Right-handed alpha
Helix 26
AC8
A
870 895Right-handed alpha
Helix 27
AC9
A
902 925Right-handed alpha
Helix 28
AD1
A
931 941Right-handed alpha
Helix 29
AD2
A
941 962Right-handed alpha
Helix 30
AD3
A
963 985Right-handed alpha
Helix 31
AD4
A
985 991Right-handed alpha
Helix 32
AD5
A
996 1032Right-handed alpha
Helix 33
AD6
A
1040 1054Right-handed alpha
Helix 34
AD7
A
1059 1063Right-handed 310
Helix 35
AD8
A
1089 1104Right-handed alpha
Helix 36
AD9
A
1104 1143Right-handed alpha
Helix 37
AE1
A
1147 1150Right-handed 310
Helix 38
AE2
A
1151 1160Right-handed alpha
Helix 39
AE3
A
1187 1215Right-handed alpha
Helix 40
AE4
A
1215 1245Right-handed alpha
Helix 41
AE5
B
165 175Right-handed alpha
Helix 42
AE6
B
204 217Right-handed alpha
Helix 43
AE7
B
230 239Right-handed alpha
Helix 44
AE8
B
309 322Right-handed alpha
Helix 45
AE9
B
344 356Right-handed alpha
Helix 46
AF1
B
368 379Right-handed alpha
Helix 47
AF2
B
391 400Right-handed alpha
Helix 48
AF3
B
409 424Right-handed alpha
Helix 49
AF4
B
441 453Right-handed alpha
Helix 50
AF5
B
456 467Right-handed alpha
Helix 51
AF6
B
468 477Right-handed alpha
Helix 52
AF7
B
486 498Right-handed alpha
Helix 53
AF8
B
500 511Right-handed alpha
Helix 54
AF9
B
513 518Right-handed alpha
Helix 55
AG1
B
519 529Right-handed alpha
Helix 56
AG2
B
536 544Right-handed alpha
Helix 57
AG3
B
556 568Right-handed alpha
Helix 58
AG4
B
636 648Right-handed alpha
Helix 59
AG5
B
652 661Right-handed alpha
Helix 60
AG6
B
663 680Right-handed alpha
Helix 61
AG7
B
696 717Right-handed alpha
Helix 62
AG8
B
717 726Right-handed alpha
Helix 63
AG9
B
736 745Right-handed alpha
Helix 64
AH1
B
752 764Right-handed alpha
Helix 65
AH2
B
862 870Right-handed alpha
Helix 66
AH3
B
870 895Right-handed alpha
Helix 67
AH4
B
902 925Right-handed alpha
Helix 68
AH5
B
931 941Right-handed alpha
Helix 69
AH6
B
941 962Right-handed alpha
Helix 70
AH7
B
963 985Right-handed alpha
Helix 71
AH8
B
985 991Right-handed alpha
Helix 72
AH9
B
996 1032Right-handed alpha
Helix 73
AI1
B
1040 1054Right-handed alpha
Helix 74
AI2
B
1059 1063Right-handed 310
Helix 75
AI3
B
1089 1104Right-handed alpha
Helix 76
AI4
B
1104 1143Right-handed alpha
Helix 77
AI5
B
1147 1150Right-handed 310
Helix 78
AI6
B
1151 1160Right-handed alpha
Helix 79
AI7
B
1187 1215Right-handed alpha
Helix 80
AI8
B
1215 1245Right-handed alpha
Helix 81
AI9
C
165 175Right-handed alpha
Helix 82
AJ1
C
204 217Right-handed alpha
Helix 83
AJ2
C
230 239Right-handed alpha
Helix 84
AJ3
C
309 322Right-handed alpha
Helix 85
AJ4
C
344 356Right-handed alpha
Helix 86
AJ5
C
368 379Right-handed alpha
Helix 87
AJ6
C
391 400Right-handed alpha
Helix 88
AJ7
C
409 424Right-handed alpha
Helix 89
AJ8
C
441 453Right-handed alpha
Helix 90
AJ9
C
456 467Right-handed alpha
Helix 91
AK1
C
468 477Right-handed alpha
Helix 92
AK2
C
486 498Right-handed alpha
Helix 93
AK3
C
500 511Right-handed alpha
Helix 94
AK4
C
513 518Right-handed alpha
Helix 95
AK5
C
519 529Right-handed alpha
Helix 96
AK6
C
536 544Right-handed alpha
Helix 97
AK7
C
556 568Right-handed alpha
Helix 98
AK8
C
636 648Right-handed alpha
Helix 99
AK9
C
652 661Right-handed alpha
Helix 100
AL1
C
663 680Right-handed alpha
Helix 101
AL2
C
696 717Right-handed alpha
Helix 102
AL3
C
717 726Right-handed alpha
Helix 103
AL4
C
736 745Right-handed alpha
Helix 104
AL5
C
752 764Right-handed alpha
Helix 105
AL6
C
862 870Right-handed alpha
Helix 106
AL7
C
870 895Right-handed alpha
Helix 107
AL8
C
902 925Right-handed alpha
Helix 108
AL9
C
931 941Right-handed alpha
Helix 109
AM1
C
941 962Right-handed alpha
Helix 110
AM2
C
963 985Right-handed alpha
Helix 111
AM3
C
985 991Right-handed alpha
Helix 112
AM4
C
996 1032Right-handed alpha
Helix 113
AM5
C
1040 1054Right-handed alpha
Helix 114
AM6
C
1059 1063Right-handed 310
Helix 115
AM7
C
1089 1104Right-handed alpha
Helix 116
AM8
C
1104 1143Right-handed alpha
Helix 117
AM9
C
1147 1150Right-handed 310
Helix 118
AN1
C
1151 1160Right-handed alpha
Helix 119
AN2
C
1187 1215Right-handed alpha
Helix 120
AN3
C
1215 1245Right-handed alpha
Helix 121
AN4
D
165 175Right-handed alpha
Helix 122
AN5
D
204 217Right-handed alpha
Helix 123
AN6
D
230 239Right-handed alpha
Helix 124
AN7
D
309 322Right-handed alpha
Helix 125
AN8
D
344 356Right-handed alpha
Helix 126
AN9
D
368 379Right-handed alpha
Helix 127
AO1
D
391 400Right-handed alpha
Helix 128
AO2
D
409 424Right-handed alpha
Helix 129
AO3
D
441 453Right-handed alpha
Helix 130
AO4
D
456 467Right-handed alpha
Helix 131
AO5
D
468 477Right-handed alpha
Helix 132
AO6
D
486 498Right-handed alpha
Helix 133
AO7
D
500 511Right-handed alpha
Helix 134
AO8
D
513 518Right-handed alpha
Helix 135
AO9
D
519 529Right-handed alpha
Helix 136
AP1
D
536 544Right-handed alpha
Helix 137
AP2
D
556 568Right-handed alpha
Helix 138
AP3
D
636 648Right-handed alpha
Helix 139
AP4
D
652 661Right-handed alpha
Helix 140
AP5
D
663 680Right-handed alpha
Helix 141
AP6
D
696 717Right-handed alpha
Helix 142
AP7
D
717 726Right-handed alpha
Helix 143
AP8
D
736 745Right-handed alpha
Helix 144
AP9
D
752 764Right-handed alpha
Helix 145
AQ1
D
862 870Right-handed alpha
Helix 146
AQ2
D
870 895Right-handed alpha
Helix 147
AQ3
D
902 925Right-handed alpha
Helix 148
AQ4
D
931 941Right-handed alpha
Helix 149
AQ5
D
941 962Right-handed alpha
Helix 150
AQ6
D
963 985Right-handed alpha
Helix 151
AQ7
D
985 991Right-handed alpha
Helix 152
AQ8
D
996 1032Right-handed alpha
Helix 153
AQ9
D
1040 1054Right-handed alpha
Helix 154
AR1
D
1059 1063Right-handed 310
Helix 155
AR2
D
1089 1104Right-handed alpha
Helix 156
AR3
D
1104 1143Right-handed alpha
Helix 157
AR4
D
1147 1150Right-handed 310
Helix 158
AR5
D
1151 1160Right-handed alpha
Helix 159
AR6
D
1187 1215Right-handed alpha
Helix 160
AR7
D
1215 1245Right-handed alpha
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There are 4 sheets in PDB entry 9B29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
292 296parallel
Strand 3
A
251 254parallel
Strand 4
A
219 223parallel
Strand 5
A
185 189parallel
Strand 6
A
334 338parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
B
292 296parallel
Strand 3
B
251 254parallel
Strand 4
B
219 223parallel
Strand 5
B
185 189parallel
Strand 6
B
334 338parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 159first strand
Strand 2
C
292 296parallel
Strand 3
C
251 254parallel
Strand 4
C
219 223parallel
Strand 5
C
185 189parallel
Strand 6
C
334 338parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
157 159first strand
Strand 2
D
292 296parallel
Strand 3
D
251 254parallel
Strand 4
D
219 223parallel
Strand 5
D
185 189parallel
Strand 6
D
334 338parallel
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