Analysis of interatomic Contacts of Structural Units in PDB entry:
9B2Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9B2Q entry

There is 1 chain in PDB entry 9B2Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5HIS 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 9B2Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
40 54Right-handed alpha
Helix 3
AA3
A
64 68Right-handed 310
Helix 4
AA4
A
73 77Right-handed 310
Helix 5
AA5
A
80 94Right-handed alpha
Helix 6
AA6
A
108 113Right-handed alpha
Helix 7
AA7
A
120 124Right-handed 310
Helix 8
AA8
A
137 141Right-handed 310
Helix 9
AA9
A
145 162Right-handed alpha
Helix 10
AB1
A
172 187Right-handed alpha
Helix 11
AB2
A
214 222Right-handed alpha
Helix 12
AB3
A
222 238Right-handed alpha
Helix 13
AB4
A
248 260Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9B2Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
103 105parallel
Strand 3
A
56 61parallel
Strand 4
A
30 35parallel
Strand 5
A
165 169parallel
Strand 6
A
191 195parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
283 284anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 273first strand
Strand 2
A
290 299anti-parallel
Strand 3
A
306 315anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il