Analysis of interatomic Contacts of Structural Units in PDB entry:
9B2U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9B2U entry

There are 2 chains in PDB entry 9B2U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ARG 2GLN 5
K
 LYS 470LYS 798
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 9B2U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
K
474 479Right-handed alpha
Helix 2
AA2
K
480 486Right-handed alpha
Helix 3
AA3
K
528 545Right-handed alpha
Helix 4
AA4
K
546 548Right-handed 310
Helix 5
AA5
K
570 584Right-handed alpha
Helix 6
AA6
K
613 615Right-handed 310
Helix 7
AA7
K
621 644Right-handed alpha
Helix 8
AA8
K
708 713Right-handed 310
Helix 9
AA9
K
716 729Right-handed alpha
Helix 10
AB1
K
738 755Right-handed alpha
Helix 11
AB2
K
764 780Right-handed alpha
Helix 12
AB3
K
786 794Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9B2U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
472 473first strand
Strand 2
K
559 566parallel
Strand 3
K
599 606anti-parallel
Strand 4
K
507 515anti-parallel
Strand 5
K
496 502anti-parallel
Strand 6
K
488 492anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
520 521first strand
Strand 2
K
524 525anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
610 611first strand
Strand 2
K
655 659anti-parallel
Strand 3
K
681 685anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
664 669first strand
Strand 2
K
672 677anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
693 695first strand
Strand 2
K
698 700anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il