Analysis of interatomic Contacts of Structural Units in PDB entry:
9B35

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B35 entry

There are 4 chains in PDB entry 9B35 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 431	ARG 874
B	ARG 431	ARG 874
C	ARG 431	ARG 874
D	ARG 431	ARG 874

There are 70 helices in PDB entry 9B35. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	461	475	Right-handed alpha
Helix 2	AA2	A	499	507	Right-handed alpha
Helix 3	AA3	A	520	525	Right-handed alpha
Helix 4	AA4	A	553	557	Right-handed 310
Helix 5	AA5	A	562	585	Right-handed alpha
Helix 6	AA6	A	607	620	Right-handed alpha
Helix 7	AA7	A	630	660	Right-handed alpha
Helix 8	AA8	A	670	676	Right-handed alpha
Helix 9	AA9	A	688	697	Right-handed alpha
Helix 10	AB1	A	699	710	Right-handed alpha
Helix 11	AB2	A	720	731	Right-handed alpha
Helix 12	AB3	A	739	746	Right-handed alpha
Helix 13	AB4	A	773	788	Right-handed alpha
Helix 14	AB5	A	789	800	Right-handed alpha
Helix 15	AB6	A	816	820	Right-handed 310
Helix 16	AB7	A	821	849	Right-handed alpha
Helix 17	AB8	A	850	852	Right-handed 310
Helix 18	AB9	A	855	868	Right-handed alpha
Helix 19	AC1	B	455	457	Right-handed 310
Helix 20	AC2	B	461	474	Right-handed alpha
Helix 21	AC3	B	500	507	Right-handed alpha
Helix 22	AC4	B	520	525	Right-handed alpha
Helix 23	AC5	B	560	583	Right-handed alpha
Helix 24	AC6	B	607	620	Right-handed alpha
Helix 25	AC7	B	630	655	Right-handed alpha
Helix 26	AC8	B	670	676	Right-handed alpha
Helix 27	AC9	B	688	696	Right-handed alpha
Helix 28	AD1	B	699	712	Right-handed alpha
Helix 29	AD2	B	712	716	Right-handed alpha
Helix 30	AD3	B	721	730	Right-handed alpha
Helix 31	AD4	B	739	749	Right-handed alpha
Helix 32	AD5	B	774	789	Right-handed alpha
Helix 33	AD6	B	789	800	Right-handed alpha
Helix 34	AD7	B	821	849	Right-handed alpha
Helix 35	AD8	B	856	870	Right-handed alpha
Helix 36	AD9	C	461	475	Right-handed alpha
Helix 37	AE1	C	499	507	Right-handed alpha
Helix 38	AE2	C	520	525	Right-handed alpha
Helix 39	AE3	C	553	557	Right-handed 310
Helix 40	AE4	C	562	585	Right-handed alpha
Helix 41	AE5	C	607	620	Right-handed alpha
Helix 42	AE6	C	630	660	Right-handed alpha
Helix 43	AE7	C	670	676	Right-handed alpha
Helix 44	AE8	C	688	697	Right-handed alpha
Helix 45	AE9	C	699	710	Right-handed alpha
Helix 46	AF1	C	720	731	Right-handed alpha
Helix 47	AF2	C	739	746	Right-handed alpha
Helix 48	AF3	C	773	788	Right-handed alpha
Helix 49	AF4	C	789	800	Right-handed alpha
Helix 50	AF5	C	816	820	Right-handed 310
Helix 51	AF6	C	821	849	Right-handed alpha
Helix 52	AF7	C	850	852	Right-handed 310
Helix 53	AF8	C	855	868	Right-handed alpha
Helix 54	AF9	D	455	457	Right-handed 310
Helix 55	AG1	D	461	474	Right-handed alpha
Helix 56	AG2	D	500	507	Right-handed alpha
Helix 57	AG3	D	520	525	Right-handed alpha
Helix 58	AG4	D	560	583	Right-handed alpha
Helix 59	AG5	D	607	620	Right-handed alpha
Helix 60	AG6	D	630	655	Right-handed alpha
Helix 61	AG7	D	670	676	Right-handed alpha
Helix 62	AG8	D	688	696	Right-handed alpha
Helix 63	AG9	D	699	712	Right-handed alpha
Helix 64	AH1	D	712	716	Right-handed alpha
Helix 65	AH2	D	721	730	Right-handed alpha
Helix 66	AH3	D	739	749	Right-handed alpha
Helix 67	AH4	D	774	789	Right-handed alpha
Helix 68	AH5	D	789	800	Right-handed alpha
Helix 69	AH6	D	821	849	Right-handed alpha
Helix 70	AH7	D	856	870	Right-handed alpha

There are 16 sheets in PDB entry 9B35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	446	first strand
Strand 2	A	459	460	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	532	535	first strand
Strand 2	A	763	765	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	735	738	first strand
Strand 2	A	538	543	anti-parallel
Strand 3	A	752	755	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	435	first strand
Strand 2	B	479	480	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	459	460	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	536	first strand
Strand 2	B	762	763	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	718	first strand
Strand 2	B	681	685	parallel
Strand 3	B	733	738	parallel
Strand 4	B	538	543	anti-parallel
Strand 5	B	752	755	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	549	first strand
Strand 2	B	662	663	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	446	first strand
Strand 2	C	459	460	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	532	535	first strand
Strand 2	C	763	765	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	735	738	first strand
Strand 2	C	538	543	anti-parallel
Strand 3	C	752	755	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	434	435	first strand
Strand 2	D	479	480	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	446	first strand
Strand 2	D	459	460	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	536	first strand
Strand 2	D	762	763	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	717	718	first strand
Strand 2	D	681	685	parallel
Strand 3	D	733	738	parallel
Strand 4	D	538	543	anti-parallel
Strand 5	D	752	755	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	548	549	first strand
Strand 2	D	662	663	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B35

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B35