Analysis of interatomic Contacts of Structural Units in PDB entry:
9B38

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B38 entry

There are 4 chains in PDB entry 9B38 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 34	PRO 805
B	HIS 34	PRO 805
C	HIS 34	PRO 805
D	HIS 34	PRO 805

There are100 helices in PDB entry 9B38. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	67	Right-handed alpha
Helix 2	AA2	A	87	102	Right-handed alpha
Helix 3	AA3	A	112	126	Right-handed alpha
Helix 4	AA4	A	152	168	Right-handed alpha
Helix 5	AA5	A	180	185	Right-handed alpha
Helix 6	AA6	A	185	190	Right-handed alpha
Helix 7	AA7	A	211	220	Right-handed alpha
Helix 8	AA8	A	231	244	Right-handed alpha
Helix 9	AA9	A	260	264	Right-handed 310
Helix 10	AB1	A	286	300	Right-handed alpha
Helix 11	AB2	A	318	336	Right-handed alpha
Helix 12	AB3	A	355	364	Right-handed alpha
Helix 13	AB4	A	423	427	Right-handed 310
Helix 14	AB5	A	461	475	Right-handed alpha
Helix 15	AB6	A	500	508	Right-handed alpha
Helix 16	AB7	A	641	662	Right-handed alpha
Helix 17	AB8	A	670	676	Right-handed alpha
Helix 18	AB9	A	688	696	Right-handed alpha
Helix 19	AC1	A	699	712	Right-handed alpha
Helix 20	AC2	A	712	717	Right-handed alpha
Helix 21	AC3	A	721	730	Right-handed alpha
Helix 22	AC4	A	738	749	Right-handed alpha
Helix 23	AC5	A	774	784	Right-handed alpha
Helix 24	AC6	A	794	798	Right-handed 310
Helix 25	AC7	B	51	66	Right-handed alpha
Helix 26	AC8	B	89	102	Right-handed alpha
Helix 27	AC9	B	111	125	Right-handed alpha
Helix 28	AD1	B	152	167	Right-handed alpha
Helix 29	AD2	B	180	185	Right-handed alpha
Helix 30	AD3	B	185	190	Right-handed alpha
Helix 31	AD4	B	191	194	Right-handed 310
Helix 32	AD5	B	211	220	Right-handed alpha
Helix 33	AD6	B	231	245	Right-handed alpha
Helix 34	AD7	B	260	264	Right-handed 310
Helix 35	AD8	B	286	301	Right-handed alpha
Helix 36	AD9	B	306	310	Right-handed 310
Helix 37	AE1	B	317	336	Right-handed alpha
Helix 38	AE2	B	355	364	Right-handed alpha
Helix 39	AE3	B	461	474	Right-handed alpha
Helix 40	AE4	B	500	507	Right-handed alpha
Helix 41	AE5	B	520	527	Right-handed alpha
Helix 42	AE6	B	642	665	Right-handed alpha
Helix 43	AE7	B	671	676	Right-handed alpha
Helix 44	AE8	B	688	696	Right-handed alpha
Helix 45	AE9	B	699	712	Right-handed alpha
Helix 46	AF1	B	720	731	Right-handed alpha
Helix 47	AF2	B	738	749	Right-handed alpha
Helix 48	AF3	B	773	788	Right-handed alpha
Helix 49	AF4	B	789	794	Right-handed alpha
Helix 50	AF5	B	794	799	Right-handed alpha
Helix 51	AF6	C	51	67	Right-handed alpha
Helix 52	AF7	C	87	102	Right-handed alpha
Helix 53	AF8	C	112	126	Right-handed alpha
Helix 54	AF9	C	152	168	Right-handed alpha
Helix 55	AG1	C	180	185	Right-handed alpha
Helix 56	AG2	C	185	190	Right-handed alpha
Helix 57	AG3	C	211	220	Right-handed alpha
Helix 58	AG4	C	231	244	Right-handed alpha
Helix 59	AG5	C	260	264	Right-handed 310
Helix 60	AG6	C	286	300	Right-handed alpha
Helix 61	AG7	C	318	336	Right-handed alpha
Helix 62	AG8	C	355	364	Right-handed alpha
Helix 63	AG9	C	423	427	Right-handed 310
Helix 64	AH1	C	461	475	Right-handed alpha
Helix 65	AH2	C	500	508	Right-handed alpha
Helix 66	AH3	C	641	662	Right-handed alpha
Helix 67	AH4	C	670	676	Right-handed alpha
Helix 68	AH5	C	688	696	Right-handed alpha
Helix 69	AH6	C	699	712	Right-handed alpha
Helix 70	AH7	C	712	717	Right-handed alpha
Helix 71	AH8	C	721	730	Right-handed alpha
Helix 72	AH9	C	738	749	Right-handed alpha
Helix 73	AI1	C	774	784	Right-handed alpha
Helix 74	AI2	C	794	798	Right-handed 310
Helix 75	AI3	D	51	66	Right-handed alpha
Helix 76	AI4	D	89	102	Right-handed alpha
Helix 77	AI5	D	111	125	Right-handed alpha
Helix 78	AI6	D	152	167	Right-handed alpha
Helix 79	AI7	D	180	185	Right-handed alpha
Helix 80	AI8	D	185	190	Right-handed alpha
Helix 81	AI9	D	191	194	Right-handed 310
Helix 82	AJ1	D	211	220	Right-handed alpha
Helix 83	AJ2	D	231	245	Right-handed alpha
Helix 84	AJ3	D	260	264	Right-handed 310
Helix 85	AJ4	D	286	301	Right-handed alpha
Helix 86	AJ5	D	306	310	Right-handed 310
Helix 87	AJ6	D	317	336	Right-handed alpha
Helix 88	AJ7	D	355	364	Right-handed alpha
Helix 89	AJ8	D	461	474	Right-handed alpha
Helix 90	AJ9	D	500	507	Right-handed alpha
Helix 91	AK1	D	520	527	Right-handed alpha
Helix 92	AK2	D	642	665	Right-handed alpha
Helix 93	AK3	D	671	676	Right-handed alpha
Helix 94	AK4	D	688	696	Right-handed alpha
Helix 95	AK5	D	699	712	Right-handed alpha
Helix 96	AK6	D	720	731	Right-handed alpha
Helix 97	AK7	D	738	749	Right-handed alpha
Helix 98	AK8	D	773	788	Right-handed alpha
Helix 99	AK9	D	789	794	Right-handed alpha
Helix 100	AL1	D	794	799	Right-handed alpha

There are 36 sheets in PDB entry 9B38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	42	first strand
Strand 2	A	79	82	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	129	130	parallel
Strand 3	A	146	147	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	173	176	parallel
Strand 3	A	225	229	parallel
Strand 4	A	253	255	parallel
Strand 5	A	275	278	parallel
Strand 6	A	392	395	anti-parallel
Strand 7	A	398	401	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	406	first strand
Strand 2	A	410	413	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	437	first strand
Strand 2	A	477	482	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	446	first strand
Strand 2	A	459	460	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	529	first strand
Strand 2	A	767	768	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	537	first strand
Strand 2	A	761	764	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	543	first strand
Strand 2	A	752	755	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	683	first strand
Strand 2	A	733	735	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	37	43	parallel
Strand 3	B	81	83	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	37	43	parallel
Strand 3	B	105	107	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	131	first strand
Strand 2	B	146	148	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	176	first strand
Strand 2	B	202	203	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	226	first strand
Strand 2	B	253	254	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	395	first strand
Strand 2	B	398	406	anti-parallel
Strand 3	B	410	411	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	436	first strand
Strand 2	B	478	481	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	518	first strand
Strand 2	B	762	765	anti-parallel
Strand 3	B	534	536	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	42	first strand
Strand 2	C	79	82	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	107	first strand
Strand 2	C	129	130	parallel
Strand 3	C	146	147	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	203	first strand
Strand 2	C	173	176	parallel
Strand 3	C	225	229	parallel
Strand 4	C	253	255	parallel
Strand 5	C	275	278	parallel
Strand 6	C	392	395	anti-parallel
Strand 7	C	398	401	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	406	first strand
Strand 2	C	410	413	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	432	437	first strand
Strand 2	C	477	482	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	446	first strand
Strand 2	C	459	460	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	528	529	first strand
Strand 2	C	767	768	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	537	first strand
Strand 2	C	761	764	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	540	543	first strand
Strand 2	C	752	755	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	683	first strand
Strand 2	C	733	735	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	37	43	parallel
Strand 3	D	81	83	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	37	43	parallel
Strand 3	D	105	107	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	146	148	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	176	first strand
Strand 2	D	202	203	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	226	first strand
Strand 2	D	253	254	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	395	first strand
Strand 2	D	398	406	anti-parallel
Strand 3	D	410	411	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	433	436	first strand
Strand 2	D	478	481	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	518	first strand
Strand 2	D	762	765	anti-parallel
Strand 3	D	534	536	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B38

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B38