Analysis of interatomic Contacts of Structural Units in PDB entry:
9B39

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B39 entry

There are 4 chains in PDB entry 9B39 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 33	ARG 874
B	THR 33	ARG 874
C	THR 33	ARG 874
D	THR 33	ARG 874

There are116 helices in PDB entry 9B39. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	66	Right-handed alpha
Helix 2	AA2	A	87	100	Right-handed alpha
Helix 3	AA3	A	112	126	Right-handed alpha
Helix 4	AA4	A	152	168	Right-handed alpha
Helix 5	AA5	A	179	184	Right-handed alpha
Helix 6	AA6	A	185	190	Right-handed alpha
Helix 7	AA7	A	190	195	Right-handed alpha
Helix 8	AA8	A	211	221	Right-handed alpha
Helix 9	AA9	A	231	245	Right-handed alpha
Helix 10	AB1	A	286	301	Right-handed alpha
Helix 11	AB2	A	317	337	Right-handed alpha
Helix 12	AB3	A	355	364	Right-handed alpha
Helix 13	AB4	A	461	475	Right-handed alpha
Helix 14	AB5	A	500	507	Right-handed alpha
Helix 15	AB6	A	520	527	Right-handed alpha
Helix 16	AB7	A	560	584	Right-handed alpha
Helix 17	AB8	A	607	620	Right-handed alpha
Helix 18	AB9	A	630	664	Right-handed alpha
Helix 19	AC1	A	670	677	Right-handed alpha
Helix 20	AC2	A	688	696	Right-handed alpha
Helix 21	AC3	A	699	712	Right-handed alpha
Helix 22	AC4	A	713	718	Right-handed alpha
Helix 23	AC5	A	721	731	Right-handed alpha
Helix 24	AC6	A	739	748	Right-handed alpha
Helix 25	AC7	A	774	788	Right-handed alpha
Helix 26	AC8	A	789	798	Right-handed alpha
Helix 27	AC9	A	822	851	Right-handed alpha
Helix 28	AD1	A	859	864	Right-handed alpha
Helix 29	AD2	B	51	67	Right-handed alpha
Helix 30	AD3	B	87	102	Right-handed alpha
Helix 31	AD4	B	111	126	Right-handed alpha
Helix 32	AD5	B	152	167	Right-handed alpha
Helix 33	AD6	B	180	185	Right-handed alpha
Helix 34	AD7	B	185	190	Right-handed alpha
Helix 35	AD8	B	211	221	Right-handed alpha
Helix 36	AD9	B	231	245	Right-handed alpha
Helix 37	AE1	B	266	270	Right-handed 310
Helix 38	AE2	B	286	300	Right-handed alpha
Helix 39	AE3	B	306	310	Right-handed 310
Helix 40	AE4	B	317	337	Right-handed alpha
Helix 41	AE5	B	355	365	Right-handed alpha
Helix 42	AE6	B	455	459	Right-handed 310
Helix 43	AE7	B	461	475	Right-handed alpha
Helix 44	AE8	B	499	507	Right-handed alpha
Helix 45	AE9	B	520	527	Right-handed alpha
Helix 46	AF1	B	560	583	Right-handed alpha
Helix 47	AF2	B	607	620	Right-handed alpha
Helix 48	AF3	B	630	661	Right-handed alpha
Helix 49	AF4	B	670	675	Right-handed alpha
Helix 50	AF5	B	688	696	Right-handed alpha
Helix 51	AF6	B	699	710	Right-handed alpha
Helix 52	AF7	B	720	731	Right-handed alpha
Helix 53	AF8	B	738	749	Right-handed alpha
Helix 54	AF9	B	774	789	Right-handed alpha
Helix 55	AG1	B	789	799	Right-handed alpha
Helix 56	AG2	B	821	853	Right-handed alpha
Helix 57	AG3	B	860	868	Right-handed alpha
Helix 58	AG4	C	51	65	Right-handed alpha
Helix 59	AG5	C	87	102	Right-handed alpha
Helix 60	AG6	C	113	126	Right-handed alpha
Helix 61	AG7	C	152	167	Right-handed alpha
Helix 62	AG8	C	178	183	Right-handed 310
Helix 63	AG9	C	185	190	Right-handed alpha
Helix 64	AH1	C	211	221	Right-handed alpha
Helix 65	AH2	C	231	245	Right-handed alpha
Helix 66	AH3	C	286	300	Right-handed alpha
Helix 67	AH4	C	317	337	Right-handed alpha
Helix 68	AH5	C	355	365	Right-handed alpha
Helix 69	AH6	C	461	475	Right-handed alpha
Helix 70	AH7	C	500	507	Right-handed alpha
Helix 71	AH8	C	520	525	Right-handed alpha
Helix 72	AH9	C	560	582	Right-handed alpha
Helix 73	AI1	C	609	620	Right-handed alpha
Helix 74	AI2	C	630	665	Right-handed alpha
Helix 75	AI3	C	670	675	Right-handed alpha
Helix 76	AI4	C	688	694	Right-handed alpha
Helix 77	AI5	C	699	712	Right-handed alpha
Helix 78	AI6	C	720	729	Right-handed alpha
Helix 79	AI7	C	738	749	Right-handed alpha
Helix 80	AI8	C	773	788	Right-handed alpha
Helix 81	AI9	C	789	798	Right-handed alpha
Helix 82	AJ1	C	816	821	Right-handed alpha
Helix 83	AJ2	C	822	853	Right-handed alpha
Helix 84	AJ3	C	857	870	Right-handed alpha
Helix 85	AJ4	D	51	67	Right-handed alpha
Helix 86	AJ5	D	87	102	Right-handed alpha
Helix 87	AJ6	D	111	126	Right-handed alpha
Helix 88	AJ7	D	154	168	Right-handed alpha
Helix 89	AJ8	D	178	184	Right-handed 310
Helix 90	AJ9	D	185	190	Right-handed alpha
Helix 91	AK1	D	191	194	Right-handed 310
Helix 92	AK2	D	211	221	Right-handed alpha
Helix 93	AK3	D	231	244	Right-handed alpha
Helix 94	AK4	D	286	301	Right-handed alpha
Helix 95	AK5	D	317	337	Right-handed alpha
Helix 96	AK6	D	355	364	Right-handed alpha
Helix 97	AK7	D	413	418	Right-handed alpha
Helix 98	AK8	D	461	471	Right-handed alpha
Helix 99	AK9	D	491	495	Right-handed 310
Helix 100	AL1	D	500	507	Right-handed alpha
Helix 101	AL2	D	520	527	Right-handed alpha
Helix 102	AL3	D	560	585	Right-handed alpha
Helix 103	AL4	D	607	620	Right-handed alpha
Helix 104	AL5	D	630	665	Right-handed alpha
Helix 105	AL6	D	672	676	Right-handed 310
Helix 106	AL7	D	688	696	Right-handed alpha
Helix 107	AL8	D	699	713	Right-handed alpha
Helix 108	AL9	D	721	730	Right-handed alpha
Helix 109	AM1	D	738	749	Right-handed alpha
Helix 110	AM2	D	774	789	Right-handed alpha
Helix 111	AM3	D	789	799	Right-handed alpha
Helix 112	AM4	D	816	821	Right-handed alpha
Helix 113	AM5	D	821	839	Right-handed alpha
Helix 114	AM6	D	839	853	Right-handed alpha
Helix 115	AM7	D	857	868	Right-handed alpha
Helix 116	AM8	D	869	874	Right-handed alpha

There are 32 sheets in PDB entry 9B39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	131	first strand
Strand 2	A	146	148	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	175	176	parallel
Strand 3	A	228	229	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	255	first strand
Strand 2	A	275	280	parallel
Strand 3	A	390	393	anti-parallel
Strand 4	A	400	406	anti-parallel
Strand 5	A	410	412	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	437	first strand
Strand 2	A	480	482	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	529	first strand
Strand 2	A	767	768	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	535	first strand
Strand 2	A	763	764	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	539	first strand
Strand 2	A	737	738	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	543	first strand
Strand 2	A	752	754	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	83	first strand
Strand 2	B	38	43	parallel
Strand 3	B	105	106	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	147	148	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	175	176	parallel
Strand 3	B	228	229	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	370	first strand
Strand 2	B	373	374	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	395	first strand
Strand 2	B	398	405	anti-parallel
Strand 3	B	411	412	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	437	first strand
Strand 2	B	479	482	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	536	first strand
Strand 2	B	762	763	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	683	first strand
Strand 2	B	734	737	parallel
Strand 3	B	539	542	anti-parallel
Strand 4	B	753	755	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	81	83	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	146	148	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	203	first strand
Strand 2	C	173	176	parallel
Strand 3	C	226	228	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	280	first strand
Strand 2	C	390	393	anti-parallel
Strand 3	C	401	404	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	432	435	first strand
Strand 2	C	477	480	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	513	517	first strand
Strand 2	C	765	767	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	537	first strand
Strand 2	C	761	762	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	74	75	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	39	first strand
Strand 2	D	78	79	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	146	148	parallel
Strand 3	D	382	383	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	176	first strand
Strand 2	D	202	203	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	226	first strand
Strand 2	D	253	254	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	395	first strand
Strand 2	D	398	401	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	446	first strand
Strand 2	D	459	460	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	518	first strand
Strand 2	D	762	765	anti-parallel
Strand 3	D	534	536	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	540	542	first strand
Strand 2	D	753	755	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B39

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B39