Analysis of interatomic Contacts of Structural Units in PDB entry:
9B3E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9B3E entry

There are 2 chains in PDB entry 9B3E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 103GLN 318
B
 ASP 102ALA 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 9B3E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
118 122Right-handed 310
Helix 2
AA2
A
185 188Right-handed 310
Helix 3
AA3
B
185 188Right-handed 310
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There are 6 sheets in PDB entry 9B3E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 116first strand
Strand 2
A
128 136anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
152 158anti-parallel
Strand 3
A
161 168anti-parallel
Strand 4
A
176 183anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 208first strand
Strand 2
A
211 225anti-parallel
Strand 3
A
228 235anti-parallel
Strand 4
A
241 248anti-parallel
Strand 5
A
251 259anti-parallel
Strand 6
A
281 288anti-parallel
Strand 7
A
298 304anti-parallel
Strand 8
A
308 316anti-parallel
Strand 9
A
197 208anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 116first strand
Strand 2
B
128 136anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 144first strand
Strand 2
B
152 158anti-parallel
Strand 3
B
161 168anti-parallel
Strand 4
B
176 183anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 284first strand
Strand 2
B
251 259anti-parallel
Strand 3
B
241 248anti-parallel
Strand 4
B
228 235anti-parallel
Strand 5
B
211 225anti-parallel
Strand 6
B
197 208anti-parallel
Strand 7
B
308 316anti-parallel
Strand 8
B
298 304anti-parallel
Strand 9
B
286 288anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il