Analysis of interatomic Contacts of Structural Units in PDB entry:
9B3V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B3V entry

There are 4 chains in PDB entry 9B3V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 117	THR 718
B	GLY 117	THR 718
C	GLY 117	THR 718
D	GLY 117	THR 718

There are120 helices in PDB entry 9B3V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	119	126	Right-handed alpha
Helix 2	AA2	A	128	132	Right-handed 310
Helix 3	AA3	A	135	144	Right-handed alpha
Helix 4	AA4	A	151	154	Right-handed 310
Helix 5	AA5	A	167	174	Right-handed alpha
Helix 6	AA6	A	176	186	Right-handed alpha
Helix 7	AA7	A	214	220	Right-handed 310
Helix 8	AA8	A	223	230	Right-handed alpha
Helix 9	AA9	A	248	256	Right-handed alpha
Helix 10	AB1	A	260	279	Right-handed alpha
Helix 11	AB2	A	286	290	Right-handed 310
Helix 12	AB3	A	297	306	Right-handed alpha
Helix 13	AB4	A	307	316	Right-handed alpha
Helix 14	AB5	A	323	327	Right-handed 310
Helix 15	AB6	A	355	362	Right-handed alpha
Helix 16	AB7	A	368	373	Right-handed alpha
Helix 17	AB8	A	377	413	Right-handed alpha
Helix 18	AB9	A	433	458	Right-handed alpha
Helix 19	AC1	A	459	463	Right-handed 310
Helix 20	AC2	A	471	490	Right-handed alpha
Helix 21	AC3	A	491	492	Right-handed 310
Helix 22	AC4	A	493	495	Right-handed 310
Helix 23	AC5	A	496	512	Right-handed alpha
Helix 24	AC6	A	513	519	Right-handed 310
Helix 25	AC7	A	522	532	Right-handed alpha
Helix 26	AC8	A	532	559	Right-handed alpha
Helix 27	AC9	A	592	602	Right-handed alpha
Helix 28	AD1	A	618	651	Right-handed alpha
Helix 29	AD2	A	652	673	Right-handed alpha
Helix 30	AD3	A	711	716	Right-handed alpha
Helix 31	AD4	B	119	126	Right-handed alpha
Helix 32	AD5	B	128	132	Right-handed 310
Helix 33	AD6	B	135	144	Right-handed alpha
Helix 34	AD7	B	151	154	Right-handed 310
Helix 35	AD8	B	167	174	Right-handed alpha
Helix 36	AD9	B	176	186	Right-handed alpha
Helix 37	AE1	B	214	220	Right-handed 310
Helix 38	AE2	B	223	230	Right-handed alpha
Helix 39	AE3	B	248	256	Right-handed alpha
Helix 40	AE4	B	260	279	Right-handed alpha
Helix 41	AE5	B	286	290	Right-handed 310
Helix 42	AE6	B	297	306	Right-handed alpha
Helix 43	AE7	B	307	316	Right-handed alpha
Helix 44	AE8	B	323	327	Right-handed 310
Helix 45	AE9	B	355	362	Right-handed alpha
Helix 46	AF1	B	368	373	Right-handed alpha
Helix 47	AF2	B	377	413	Right-handed alpha
Helix 48	AF3	B	433	458	Right-handed alpha
Helix 49	AF4	B	459	463	Right-handed 310
Helix 50	AF5	B	471	490	Right-handed alpha
Helix 51	AF6	B	491	492	Right-handed 310
Helix 52	AF7	B	493	495	Right-handed 310
Helix 53	AF8	B	496	512	Right-handed alpha
Helix 54	AF9	B	513	519	Right-handed 310
Helix 55	AG1	B	522	532	Right-handed alpha
Helix 56	AG2	B	532	559	Right-handed alpha
Helix 57	AG3	B	592	602	Right-handed alpha
Helix 58	AG4	B	618	651	Right-handed alpha
Helix 59	AG5	B	652	673	Right-handed alpha
Helix 60	AG6	B	711	716	Right-handed alpha
Helix 61	AG7	C	119	126	Right-handed alpha
Helix 62	AG8	C	128	132	Right-handed 310
Helix 63	AG9	C	135	144	Right-handed alpha
Helix 64	AH1	C	151	154	Right-handed 310
Helix 65	AH2	C	167	174	Right-handed alpha
Helix 66	AH3	C	176	186	Right-handed alpha
Helix 67	AH4	C	214	220	Right-handed 310
Helix 68	AH5	C	223	230	Right-handed alpha
Helix 69	AH6	C	248	256	Right-handed alpha
Helix 70	AH7	C	260	279	Right-handed alpha
Helix 71	AH8	C	286	290	Right-handed 310
Helix 72	AH9	C	297	306	Right-handed alpha
Helix 73	AI1	C	307	316	Right-handed alpha
Helix 74	AI2	C	323	327	Right-handed 310
Helix 75	AI3	C	355	362	Right-handed alpha
Helix 76	AI4	C	368	373	Right-handed alpha
Helix 77	AI5	C	377	413	Right-handed alpha
Helix 78	AI6	C	433	458	Right-handed alpha
Helix 79	AI7	C	459	463	Right-handed 310
Helix 80	AI8	C	471	490	Right-handed alpha
Helix 81	AI9	C	491	492	Right-handed 310
Helix 82	AJ1	C	493	495	Right-handed 310
Helix 83	AJ2	C	496	512	Right-handed alpha
Helix 84	AJ3	C	513	519	Right-handed 310
Helix 85	AJ4	C	522	532	Right-handed alpha
Helix 86	AJ5	C	532	559	Right-handed alpha
Helix 87	AJ6	C	592	602	Right-handed alpha
Helix 88	AJ7	C	618	651	Right-handed alpha
Helix 89	AJ8	C	652	673	Right-handed alpha
Helix 90	AJ9	C	711	716	Right-handed alpha
Helix 91	AK1	D	119	126	Right-handed alpha
Helix 92	AK2	D	128	132	Right-handed 310
Helix 93	AK3	D	135	144	Right-handed alpha
Helix 94	AK4	D	151	154	Right-handed 310
Helix 95	AK5	D	167	174	Right-handed alpha
Helix 96	AK6	D	176	186	Right-handed alpha
Helix 97	AK7	D	214	220	Right-handed 310
Helix 98	AK8	D	223	230	Right-handed alpha
Helix 99	AK9	D	248	256	Right-handed alpha
Helix 100	AL1	D	260	279	Right-handed alpha
Helix 101	AL2	D	286	290	Right-handed 310
Helix 102	AL3	D	297	306	Right-handed alpha
Helix 103	AL4	D	307	316	Right-handed alpha
Helix 104	AL5	D	323	327	Right-handed 310
Helix 105	AL6	D	355	362	Right-handed alpha
Helix 106	AL7	D	368	373	Right-handed alpha
Helix 107	AL8	D	377	413	Right-handed alpha
Helix 108	AL9	D	433	458	Right-handed alpha
Helix 109	AM1	D	459	463	Right-handed 310
Helix 110	AM2	D	471	490	Right-handed alpha
Helix 111	AM3	D	491	492	Right-handed 310
Helix 112	AM4	D	493	495	Right-handed 310
Helix 113	AM5	D	496	512	Right-handed alpha
Helix 114	AM6	D	513	519	Right-handed 310
Helix 115	AM7	D	522	532	Right-handed alpha
Helix 116	AM8	D	532	559	Right-handed alpha
Helix 117	AM9	D	592	602	Right-handed alpha
Helix 118	AN1	D	618	651	Right-handed alpha
Helix 119	AN2	D	652	673	Right-handed alpha
Helix 120	AN3	D	711	716	Right-handed alpha

There are 8 sheets in PDB entry 9B3V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	158	first strand
Strand 2	A	163	166	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	335	first strand
Strand 2	A	338	344	anti-parallel
Strand 3	A	701	710	anti-parallel
Strand 4	A	687	690	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	163	166	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	335	first strand
Strand 2	B	338	344	anti-parallel
Strand 3	B	701	710	anti-parallel
Strand 4	B	687	690	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	158	first strand
Strand 2	C	163	166	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	335	first strand
Strand 2	C	338	344	anti-parallel
Strand 3	C	701	710	anti-parallel
Strand 4	C	687	690	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	158	first strand
Strand 2	D	163	166	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	335	first strand
Strand 2	D	338	344	anti-parallel
Strand 3	D	701	710	anti-parallel
Strand 4	D	687	690	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B3V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B3V